Variant report

Variant	rs12807367
Chromosome Location	chr11:108659854-108659855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108658928..108659997-chr11:108741741..108742558,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10732846	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12787498	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788182	0.80[CEU][hapmap]
rs12799569	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466502	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531470	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1870925	0.84[EUR][1000 genomes]
rs1947928	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947929	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061680	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126570	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615721	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615734	0.95[EUR][1000 genomes]
rs2615735	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615738	0.86[EUR][1000 genomes]
rs2726876	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726880	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726887	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726891	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34746018	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35234597	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35396330	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3951111	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754342	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589029	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67069086	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68161639	0.81[EUR][1000 genomes]
rs7103209	0.83[YRI][hapmap]
rs7124142	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129535	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130825	1.00[CEU][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489910	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489912	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489923	0.98[EUR][1000 genomes]
rs73005544	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931638	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939610	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108605800-108663800	Weak transcription	K562	blood
2	chr11:108629000-108661800	Weak transcription	Left Ventricle	heart
3	chr11:108644400-108675400	Weak transcription	Primary T cells from cord blood	blood
4	chr11:108656000-108660600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:108656400-108660400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:108657600-108661800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:108657600-108662200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:108657800-108688200	Weak transcription	NHEK	skin
9	chr11:108658600-108660600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:108658800-108660200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr11:108658800-108660600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:108659200-108660000	Enhancers	Primary B cells from peripheral blood	blood
13	chr11:108659400-108660000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:108659400-108660000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:108659400-108660000	Enhancers	Adipose Nuclei	Adipose
16	chr11:108659400-108660000	Enhancers	Fetal Heart	heart
17	chr11:108659600-108660000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:108659600-108660000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:108659600-108660400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr11:108659600-108662200	Enhancers	GM12878-XiMat	blood
21	chr11:108659800-108660600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:108659800-108661800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:108659800-108662000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:108659800-108667400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:108659800-108670600	Weak transcription	Pancreas	Pancrea
26	chr11:108659800-108675000	Weak transcription	Psoas Muscle	Psoas
27	chr11:108659800-108676800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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