Variant report

Variant	rs2615738
Chromosome Location	chr11:108611284-108611285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108601301..108603596-chr11:108608940..108611887,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10732846	0.97[EUR][1000 genomes]
rs12787498	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12788182	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12799569	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12807367	0.86[EUR][1000 genomes]
rs1466502	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1531470	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1947928	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1947929	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2061680	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2126570	0.81[EUR][1000 genomes]
rs2615721	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2615734	0.82[EUR][1000 genomes]
rs2615735	0.83[EUR][1000 genomes]
rs2615742	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2726876	0.86[EUR][1000 genomes]
rs2726880	0.90[EUR][1000 genomes]
rs2726887	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2726891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34746018	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35234597	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35396330	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3951111	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4754342	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6589029	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7124142	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7129535	0.83[EUR][1000 genomes]
rs7130825	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71489910	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71489912	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71489921	0.90[EUR][1000 genomes]
rs71489923	0.85[EUR][1000 genomes]
rs73005544	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7931638	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108578800-108614400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:108581600-108626600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:108581800-108611400	Weak transcription	Brain Substantia Nigra	brain
4	chr11:108581800-108616200	Weak transcription	Esophagus	oesophagus
5	chr11:108583200-108611600	Weak transcription	Fetal Lung	lung
6	chr11:108589000-108611800	Weak transcription	Fetal Intestine Large	intestine
7	chr11:108592000-108620000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:108594000-108612800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:108594200-108611400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:108594200-108615400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr11:108594400-108613600	Weak transcription	HSMMtube	muscle
12	chr11:108594400-108625400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:108596400-108614400	Weak transcription	Right Ventricle	heart
14	chr11:108596400-108621000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:108603600-108617600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:108604600-108611800	Weak transcription	Fetal Intestine Small	intestine
17	chr11:108604600-108616000	Weak transcription	Right Atrium	heart
18	chr11:108604600-108625600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:108604600-108625800	Weak transcription	Primary T cells from cord blood	blood
20	chr11:108604800-108627800	Weak transcription	Left Ventricle	heart
21	chr11:108605000-108611600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:108605200-108611400	Weak transcription	HMEC	breast
23	chr11:108605200-108614800	Weak transcription	A549	lung
24	chr11:108605200-108618400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:108605400-108611400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:108605400-108625400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:108605800-108611400	Weak transcription	NHEK	skin
28	chr11:108605800-108611800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:108605800-108622800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:108605800-108663800	Weak transcription	K562	blood
31	chr11:108606000-108627400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:108607600-108614800	Weak transcription	Ovary	ovary
33	chr11:108607600-108622000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr11:108607600-108644600	Weak transcription	Aorta	Aorta
35	chr11:108607800-108628200	Weak transcription	Liver	Liver
36	chr11:108610200-108611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:108610800-108611400	ZNF genes & repeats	Primary B cells from cord blood	blood
38	chr11:108610800-108611400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:108610800-108612800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:108611000-108625400	Weak transcription	NHLF	lung

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