Variant report

Variant	rs2726876
Chromosome Location	chr11:108672547-108672548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108670181..108673622-chr11:108675680..108678483,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10732846	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12787498	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788182	0.80[CEU][hapmap]
rs12799569	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807367	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466502	1.00[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469274	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs1531470	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1820403	0.85[YRI][hapmap]
rs1870925	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1947928	1.00[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947929	1.00[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061680	1.00[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126570	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553769	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs2615721	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615734	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2615735	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615738	0.86[EUR][1000 genomes]
rs2726880	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726887	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726891	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726905	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs2726924	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs34746018	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35234597	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35396330	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3951111	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754342	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589029	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67069086	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68161639	0.81[EUR][1000 genomes]
rs7124142	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129535	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130825	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489910	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489912	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489921	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489923	0.98[EUR][1000 genomes]
rs73005544	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931638	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108644400-108675400	Weak transcription	Primary T cells from cord blood	blood
2	chr11:108657800-108688200	Weak transcription	NHEK	skin
3	chr11:108659800-108675000	Weak transcription	Psoas Muscle	Psoas
4	chr11:108659800-108676800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:108662200-108674600	Weak transcription	GM12878-XiMat	blood
6	chr11:108664200-108674600	Weak transcription	Brain Substantia Nigra	brain
7	chr11:108664200-108691000	Weak transcription	K562	blood
8	chr11:108667000-108679800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:108668800-108675600	Weak transcription	Primary B cells from cord blood	blood
10	chr11:108669400-108676600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:108669400-108678600	Weak transcription	HSMM	muscle
12	chr11:108669400-108678800	Weak transcription	Fetal Intestine Large	intestine
13	chr11:108670400-108677400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:108670400-108681400	Weak transcription	A549	lung
15	chr11:108670800-108674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:108672000-108672800	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links