Variant report

Variant	rs1870925
Chromosome Location	chr11:108670940-108670941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12807367	0.84[EUR][1000 genomes]
rs2061680	0.84[EUR][1000 genomes]
rs2126570	0.81[AFR][1000 genomes]
rs2615721	0.84[EUR][1000 genomes]
rs2615735	0.81[EUR][1000 genomes]
rs2726876	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2726880	0.81[EUR][1000 genomes]
rs2726887	0.81[EUR][1000 genomes]
rs7129535	0.81[EUR][1000 genomes]
rs71489921	0.81[EUR][1000 genomes]
rs71489923	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108644400-108675400	Weak transcription	Primary T cells from cord blood	blood
2	chr11:108657800-108688200	Weak transcription	NHEK	skin
3	chr11:108659800-108675000	Weak transcription	Psoas Muscle	Psoas
4	chr11:108659800-108676800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:108662200-108674600	Weak transcription	GM12878-XiMat	blood
6	chr11:108664200-108671400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:108664200-108674600	Weak transcription	Brain Substantia Nigra	brain
8	chr11:108664200-108691000	Weak transcription	K562	blood
9	chr11:108667000-108679800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:108668800-108675600	Weak transcription	Primary B cells from cord blood	blood
11	chr11:108669400-108676600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:108669400-108678600	Weak transcription	HSMM	muscle
13	chr11:108669400-108678800	Weak transcription	Fetal Intestine Large	intestine
14	chr11:108670400-108677400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:108670400-108681400	Weak transcription	A549	lung
16	chr11:108670800-108671000	Weak transcription	Pancreas	Pancrea
17	chr11:108670800-108672000	Weak transcription	Ovary	ovary
18	chr11:108670800-108674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links