Variant report

Variant	rs7129535
Chromosome Location	chr11:108697840-108697841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108695140..108698034-chr11:108715327..108717673,2	K562	blood:
2	chr11:108694511..108697317-chr11:108697385..108699740,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10732846	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12787498	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788182	0.80[CEU][hapmap]
rs12799569	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807367	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466502	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531470	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17703817	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1870925	0.81[EUR][1000 genomes]
rs1947928	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947929	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061680	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126570	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615721	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615734	0.98[EUR][1000 genomes]
rs2615735	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615738	0.83[EUR][1000 genomes]
rs2726876	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726880	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726887	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726891	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34746018	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35234597	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35396330	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3951111	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754342	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589029	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67069086	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68161639	0.81[EUR][1000 genomes]
rs7103209	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7124142	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130825	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489910	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489912	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489921	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489923	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72993517	0.96[AFR][1000 genomes]
rs72993528	0.96[AFR][1000 genomes]
rs72993554	0.92[AFR][1000 genomes]
rs73005544	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931638	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939610	0.83[AFR][1000 genomes]
rs7944806	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108675600-108709400	Weak transcription	Left Ventricle	heart
2	chr11:108675800-108700000	Weak transcription	GM12878-XiMat	blood
3	chr11:108676000-108708000	Weak transcription	Primary B cells from cord blood	blood
4	chr11:108677600-108709600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:108680400-108709400	Weak transcription	Primary T cells from cord blood	blood
6	chr11:108680600-108724400	Weak transcription	Aorta	Aorta
7	chr11:108687000-108717000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:108692200-108709400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:108695600-108698600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:108696200-108698200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:108696400-108709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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