Variant report

Variant	rs35234597
Chromosome Location	chr11:108579831-108579832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10732846	0.97[EUR][1000 genomes]
rs12787498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788182	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12799569	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807367	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466502	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531470	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947928	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947929	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061680	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126570	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615721	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615734	0.82[EUR][1000 genomes]
rs2615735	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615738	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2615742	0.85[EUR][1000 genomes]
rs2726876	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726880	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726887	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726891	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34746018	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35396330	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3951111	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754342	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68161639	0.86[AMR][1000 genomes]
rs7124142	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129535	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489921	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71489923	0.85[EUR][1000 genomes]
rs73005544	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931638	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108561800-108581400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:108561800-108581400	Weak transcription	Gastric	stomach
3	chr11:108561800-108581400	Weak transcription	Thymus	Thymus
4	chr11:108561800-108581600	Weak transcription	Spleen	Spleen
5	chr11:108563000-108581400	Weak transcription	Pancreas	Pancrea
6	chr11:108564800-108581400	Weak transcription	Fetal Brain Male	brain
7	chr11:108564800-108595400	Weak transcription	Hela-S3	cervix
8	chr11:108569800-108580600	Weak transcription	Fetal Heart	heart
9	chr11:108570000-108583400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:108570400-108581600	Weak transcription	Esophagus	oesophagus
11	chr11:108572000-108590400	Weak transcription	Stomach Mucosa	stomach
12	chr11:108573800-108582800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr11:108574800-108580400	Strong transcription	Left Ventricle	heart
14	chr11:108574800-108586800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:108575000-108580200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:108575000-108580200	Strong transcription	K562	blood
17	chr11:108575200-108581400	Weak transcription	Fetal Stomach	stomach
18	chr11:108575200-108581600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:108575400-108581400	Weak transcription	Aorta	Aorta
20	chr11:108575400-108599400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:108576600-108580000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:108577200-108580000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:108577200-108580200	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr11:108577200-108581600	Strong transcription	Fetal Muscle Trunk	muscle
25	chr11:108577200-108582600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:108577200-108583800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:108577200-108586200	Strong transcription	HSMM	muscle
28	chr11:108577400-108580000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:108577400-108580000	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:108577400-108580000	Strong transcription	Osteobl	bone
31	chr11:108577400-108583200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:108577400-108584000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
33	chr11:108577400-108584200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:108577600-108580000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:108577600-108580200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
36	chr11:108577600-108582800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr11:108577600-108584000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:108577600-108604400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr11:108577800-108580000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:108577800-108580000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:108577800-108580000	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr11:108577800-108581000	Strong transcription	Placenta Amnion	Placenta Amnion
43	chr11:108577800-108581800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:108577800-108582800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr11:108578000-108580000	ZNF genes & repeats	Liver	Liver
46	chr11:108578000-108580000	ZNF genes & repeats	NHEK	skin
47	chr11:108578000-108604400	Weak transcription	Small Intestine	intestine
48	chr11:108578200-108580000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
49	chr11:108578200-108580000	ZNF genes & repeats	Primary T cells from cord blood	blood
50	chr11:108578200-108580200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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