Variant report

Variant	rs10732846
Chromosome Location	chr11:108601565-108601566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108601301..108603596-chr11:108608940..108611887,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12787498	0.97[EUR][1000 genomes]
rs12788182	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs12799569	0.93[EUR][1000 genomes]
rs12807367	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1466502	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1531470	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17108736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1947928	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1947929	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2061680	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2126570	1.00[CEU][hapmap]
rs2615721	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2615735	0.80[EUR][1000 genomes]
rs2615738	0.97[EUR][1000 genomes]
rs2615742	0.82[EUR][1000 genomes]
rs2726876	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2726880	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2726887	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2726891	0.97[EUR][1000 genomes]
rs34746018	0.97[EUR][1000 genomes]
rs35234597	0.97[EUR][1000 genomes]
rs35396330	0.93[EUR][1000 genomes]
rs3951111	0.97[EUR][1000 genomes]
rs4754342	0.93[EUR][1000 genomes]
rs6589029	0.93[EUR][1000 genomes]
rs7106807	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7109110	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7109179	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7124142	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7129535	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7130825	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs71489910	0.92[EUR][1000 genomes]
rs71489912	0.93[EUR][1000 genomes]
rs71489921	0.87[EUR][1000 genomes]
rs71489923	0.82[EUR][1000 genomes]
rs73005544	0.92[EUR][1000 genomes]
rs7342253	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73556716	0.94[ASN][1000 genomes]
rs7928465	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7929609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7931638	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7937730	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108577600-108604400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:108578000-108604400	Weak transcription	Small Intestine	intestine
3	chr11:108578200-108604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:108578800-108604000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:108578800-108604000	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:108578800-108604200	Weak transcription	NHLF	lung
7	chr11:108578800-108604600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:108578800-108614400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:108579200-108604000	Weak transcription	HUVEC	blood vessel
10	chr11:108579800-108604200	Weak transcription	Psoas Muscle	Psoas
11	chr11:108580000-108603800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:108581000-108604200	Weak transcription	Fetal Heart	heart
13	chr11:108581200-108604200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:108581600-108626600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:108581800-108603200	Weak transcription	Gastric	stomach
16	chr11:108581800-108603200	Weak transcription	Lung	lung
17	chr11:108581800-108603400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:108581800-108603400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:108581800-108604000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:108581800-108604200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:108581800-108604200	Weak transcription	Spleen	Spleen
22	chr11:108581800-108609800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:108581800-108610800	Weak transcription	Thymus	Thymus
24	chr11:108581800-108611400	Weak transcription	Brain Substantia Nigra	brain
25	chr11:108581800-108616200	Weak transcription	Esophagus	oesophagus
26	chr11:108583000-108610600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:108583200-108611600	Weak transcription	Fetal Lung	lung
28	chr11:108584400-108604200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:108584800-108605600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:108585200-108604000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:108586200-108604400	Weak transcription	HepG2	liver
32	chr11:108587200-108608800	Weak transcription	Fetal Stomach	stomach
33	chr11:108588800-108604000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:108589000-108604200	Weak transcription	Fetal Intestine Small	intestine
35	chr11:108589000-108611800	Weak transcription	Fetal Intestine Large	intestine
36	chr11:108591400-108610600	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:108592000-108620000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:108594000-108604000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:108594000-108612800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:108594200-108603200	Weak transcription	Left Ventricle	heart
41	chr11:108594200-108604200	Weak transcription	Ovary	ovary
42	chr11:108594200-108604200	Weak transcription	K562	blood
43	chr11:108594200-108605600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr11:108594200-108608400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:108594200-108611400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:108594200-108615400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:108594400-108603200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr11:108594400-108603800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:108594400-108604000	Weak transcription	HMEC	breast
50	chr11:108594400-108604200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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