Variant report

Variant	rs17108736
Chromosome Location	chr11:108783278-108783279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10732846	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11212803	1.00[EUR][1000 genomes]
rs17108749	1.00[MEX][hapmap]
rs41422546	1.00[MEX][hapmap]
rs57718618	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59509624	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61574853	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61614154	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7106807	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7109110	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7109179	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7342253	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73556716	1.00[EUR][1000 genomes]
rs7928465	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7932427	0.94[ASN][1000 genomes]
rs7932886	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9888161	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9888280	1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
2	chr11:108763000-108797600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:108768000-108810600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:108769000-108791200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:108769200-108788600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:108769800-108789600	Weak transcription	Primary B cells from cord blood	blood
7	chr11:108775000-108794400	Weak transcription	Aorta	Aorta
8	chr11:108777200-108783800	Weak transcription	Right Atrium	heart
9	chr11:108777200-108797000	Weak transcription	Psoas Muscle	Psoas
10	chr11:108777800-108786800	Weak transcription	NHEK	skin
11	chr11:108778000-108785000	Weak transcription	A549	lung
12	chr11:108778000-108785200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:108778000-108786800	Weak transcription	NHDF-Ad	bronchial
14	chr11:108778000-108799600	Weak transcription	HMEC	breast
15	chr11:108778200-108810600	Weak transcription	Ovary	ovary
16	chr11:108778400-108783400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:108778600-108784000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:108778600-108785800	Weak transcription	NHLF	lung
19	chr11:108779600-108783400	Enhancers	Fetal Thymus	thymus
20	chr11:108779600-108783400	Enhancers	Thymus	Thymus
21	chr11:108779800-108783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:108780000-108784000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:108780600-108785600	Weak transcription	Hela-S3	cervix
24	chr11:108780600-108810600	Weak transcription	Pancreas	Pancrea
25	chr11:108780800-108790000	Weak transcription	Dnd41	blood
26	chr11:108781400-108787800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:108781600-108810400	Weak transcription	GM12878-XiMat	blood
28	chr11:108781800-108783600	Weak transcription	Fetal Heart	heart
29	chr11:108781800-108793200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr11:108782200-108792000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:108782600-108783800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:108782800-108784000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:108782800-108784200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:108782800-108784200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr11:108782800-108784600	Enhancers	NH-A	brain
36	chr11:108783000-108784000	Enhancers	Osteobl	bone
37	chr11:108783000-108785200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr11:108783000-108810600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr11:108783200-108783600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:108783200-108783600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:108783200-108783800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:108783200-108784000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr11:108783200-108784000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:108783200-108784000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:108783200-108784000	Enhancers	Fetal Intestine Large	intestine
46	chr11:108783200-108784200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:108783200-108784400	Enhancers	K562	blood

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