Variant report

Variant	rs7928465
Chromosome Location	chr11:108790321-108790322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10732846	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11212803	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57718618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59509624	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61574853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61614154	1.00[EUR][1000 genomes]
rs7106807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109179	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7342253	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73556716	1.00[EUR][1000 genomes]
rs7932427	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7932886	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9888161	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9888280	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv39083	chr11:108786697-108792970	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
2	chr11:108763000-108797600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:108768000-108810600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:108769000-108791200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:108775000-108794400	Weak transcription	Aorta	Aorta
6	chr11:108777200-108797000	Weak transcription	Psoas Muscle	Psoas
7	chr11:108778000-108799600	Weak transcription	HMEC	breast
8	chr11:108778200-108810600	Weak transcription	Ovary	ovary
9	chr11:108780600-108810600	Weak transcription	Pancreas	Pancrea
10	chr11:108781600-108810400	Weak transcription	GM12878-XiMat	blood
11	chr11:108781800-108793200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:108782200-108792000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:108783000-108810600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr11:108784200-108796600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:108784400-108793200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:108784400-108804000	Weak transcription	K562	blood
17	chr11:108785200-108807800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:108786000-108793000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:108786400-108810600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:108787000-108810800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:108787200-108799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:108787200-108799000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:108787200-108799400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:108787200-108815000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr11:108787400-108795000	Weak transcription	Brain Germinal Matrix	brain
26	chr11:108787400-108810600	Weak transcription	Liver	Liver
27	chr11:108787600-108793200	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:108787600-108795200	Weak transcription	A549	lung
29	chr11:108787600-108799400	Weak transcription	NHEK	skin
30	chr11:108787800-108791200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:108787800-108798000	Weak transcription	Fetal Thymus	thymus
32	chr11:108787800-108798000	Weak transcription	HSMMtube	muscle
33	chr11:108788000-108793200	Weak transcription	NH-A	brain
34	chr11:108788000-108793800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:108788000-108793800	Weak transcription	HUVEC	blood vessel
36	chr11:108788000-108798600	Weak transcription	HSMM	muscle
37	chr11:108788000-108799800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:108788000-108802000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:108788200-108797800	Weak transcription	Osteobl	bone
40	chr11:108788400-108793000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:108788600-108792200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:108788600-108792200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:108788600-108796800	Weak transcription	Fetal Kidney	kidney
44	chr11:108789000-108795200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:108789600-108792200	Strong transcription	Primary B cells from cord blood	blood
46	chr11:108789600-108792200	Strong transcription	Primary T cells from cord blood	blood
47	chr11:108790000-108791200	Strong transcription	Dnd41	blood
48	chr11:108790200-108810600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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