Variant report

Variant	rs61574853
Chromosome Location	chr11:108823432-108823433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11212803	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108736	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57718618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59509624	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61614154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106807	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7342253	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556716	1.00[EUR][1000 genomes]
rs7928465	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932427	0.83[AMR][1000 genomes]
rs7932886	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9888161	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888280	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108805200-108829600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108810200-108829000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:108812200-108828800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:108819400-108828400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:108819400-108828400	Weak transcription	A549	lung
6	chr11:108819400-108828400	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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