Variant report

Variant	rs59287878
Chromosome Location	chr3:159848199-159848200
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:159841649..159843761-chr3:159845368..159848227,2	K562	blood:
2	chr3:159845978..159848677-chr3:159852711..159855673,2	MCF-7	breast:
3	chr13:31191107..31193399-chr3:159846020..159848588,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189403	Chromatin interaction
ENSG00000132952	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58929592	0.85[AFR][1000 genomes]
rs66566032	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66684169	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67955459	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73171920	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73171922	0.92[ASN][1000 genomes]
rs73171924	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv877699	chr3:159820488-159976271	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159843800-159848200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:159843800-159848200	Enhancers	HSMM	muscle
3	chr3:159844800-159848200	Enhancers	HMEC	breast
4	chr3:159845200-159848200	Enhancers	HSMMtube	muscle
5	chr3:159846000-159849200	Enhancers	HUVEC	blood vessel
6	chr3:159846200-159848400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:159846200-159848400	Enhancers	NHEK	skin
8	chr3:159846200-159849200	Enhancers	Osteobl	bone
9	chr3:159846400-159848200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:159846800-159848200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:159846800-159849200	Enhancers	NHDF-Ad	bronchial
12	chr3:159846800-159849400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:159847000-159848200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:159847000-159848800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:159847000-159849200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:159847000-159849400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:159847200-159848200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:159847200-159848200	Flanking Active TSS	A549	lung
19	chr3:159847200-159848200	Enhancers	NHLF	lung
20	chr3:159847400-159849000	Enhancers	NH-A	brain
21	chr3:159847400-159849400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:159847600-159853000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:159847800-159848200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:159847800-159848200	Enhancers	Hela-S3	cervix
25	chr3:159847800-159848600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:159848000-159848600	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr3:159848000-159849200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr3:159848000-159850200	Weak transcription	Lung	lung
29	chr3:159848000-159852600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:159848000-159853000	Weak transcription	GM12878-XiMat	blood
31	chr3:159848000-159855800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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