Variant report

Variant	rs67955459
Chromosome Location	chr3:159845119-159845120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59287878	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66566032	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66684169	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73171920	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73171922	0.92[ASN][1000 genomes]
rs73171924	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv877699	chr3:159820488-159976271	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159843200-159845200	Weak transcription	NH-A	brain
2	chr3:159843800-159845400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:159843800-159848200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:159843800-159848200	Enhancers	HSMM	muscle
5	chr3:159844000-159846000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:159844200-159846000	Weak transcription	HUVEC	blood vessel
7	chr3:159844600-159845200	Flanking Active TSS	HSMMtube	muscle
8	chr3:159844600-159845800	Enhancers	NHEK	skin
9	chr3:159844600-159846000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:159844600-159846200	Weak transcription	A549	lung
11	chr3:159844800-159846200	Weak transcription	Osteobl	bone
12	chr3:159844800-159847800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:159844800-159848200	Enhancers	HMEC	breast
14	chr3:159845000-159845600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:159845000-159847000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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