Variant report

Variant	rs73171922
Chromosome Location	chr3:159840501-159840502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59287878	0.92[ASN][1000 genomes]
rs66566032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66684169	0.97[ASN][1000 genomes]
rs67955459	0.92[ASN][1000 genomes]
rs73171920	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73171924	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv877699	chr3:159820488-159976271	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159840000-159840800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:159840200-159840600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:159840200-159841000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:159840200-159841600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:159840400-159840800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr3:159840400-159840800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:159840400-159841000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:159840400-159841000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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