Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11707689	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11708616	0.90[EUR][1000 genomes]
rs11710016	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11711808	0.89[EUR][1000 genomes]
rs12638137	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638796	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17345528	0.81[EUR][1000 genomes]
rs17402964	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3804778	0.81[EUR][1000 genomes]
rs55641278	0.81[EUR][1000 genomes]
rs55710435	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56171035	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57880921	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58835747	0.89[EUR][1000 genomes]
rs60837174	0.81[EUR][1000 genomes]
rs6791964	0.84[EUR][1000 genomes]
rs72940399	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72942211	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72944107	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72946021	0.85[EUR][1000 genomes]
rs7641261	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59359251	SENP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101107200-101161200	Weak transcription	Aorta	Aorta
2	chr3:101129200-101160000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:101133600-101160600	Weak transcription	K562	blood
4	chr3:101141000-101185600	Weak transcription	Right Ventricle	heart
5	chr3:101141200-101160000	Weak transcription	Gastric	stomach
6	chr3:101142400-101146400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr3:101143600-101160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:101143800-101159800	Weak transcription	Pancreas	Pancrea
9	chr3:101144600-101160200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:101145000-101152000	Weak transcription	Primary T cells from cord blood	blood
11	chr3:101145000-101159800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr3:101145200-101159800	Weak transcription	Thymus	Thymus
13	chr3:101146000-101146400	ZNF genes & repeats	Fetal Stomach	stomach
14	chr3:101146000-101185600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:101146200-101146400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr3:101146200-101159800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:101146200-101160400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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