Variant report

Variant	rs60837174
Chromosome Location	chr3:101300875-101300876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10936707	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11708616	0.87[EUR][1000 genomes]
rs11708845	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11711808	0.88[EUR][1000 genomes]
rs11715368	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11720560	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12638137	0.81[EUR][1000 genomes]
rs12638796	0.85[EUR][1000 genomes]
rs17345528	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17345786	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17508319	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3762729	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3804775	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3804778	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55641278	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55710435	0.85[EUR][1000 genomes]
rs57880921	0.85[EUR][1000 genomes]
rs58835747	0.88[EUR][1000 genomes]
rs58907984	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59359251	0.81[EUR][1000 genomes]
rs6791964	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72944107	0.85[EUR][1000 genomes]
rs72946021	0.92[EUR][1000 genomes]
rs73863360	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7641261	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs997739	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs60837174	SENP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101294000-101301800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:101294000-101305200	Weak transcription	Esophagus	oesophagus
3	chr3:101294000-101312200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:101294200-101309000	Weak transcription	Colonic Mucosa	Colon
5	chr3:101294200-101310000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:101294400-101309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:101294800-101301200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:101294800-101305200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:101295000-101304000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:101295000-101304600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:101295000-101304600	Weak transcription	NHEK	skin
13	chr3:101295000-101305000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:101295000-101305000	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:101295000-101309400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:101295000-101310200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:101295200-101306800	Weak transcription	Psoas Muscle	Psoas
18	chr3:101295800-101305200	Weak transcription	Gastric	stomach
19	chr3:101295800-101315000	Weak transcription	Right Atrium	heart
20	chr3:101296000-101301000	Weak transcription	Fetal Stomach	stomach
21	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
22	chr3:101296200-101305200	Weak transcription	Fetal Brain Male	brain
23	chr3:101296200-101310000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:101296400-101303800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:101296400-101305200	Weak transcription	Thymus	Thymus
26	chr3:101296400-101316400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:101296600-101301200	Weak transcription	Lung	lung
28	chr3:101296600-101304000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:101296600-101304600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:101296600-101311600	Weak transcription	Stomach Mucosa	stomach
31	chr3:101296600-101315000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:101296800-101301600	Weak transcription	Fetal Brain Female	brain
33	chr3:101296800-101304600	Weak transcription	Left Ventricle	heart
34	chr3:101296800-101305000	Weak transcription	HSMMtube	muscle
35	chr3:101296800-101318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:101297400-101302000	Strong transcription	A549	lung
37	chr3:101297400-101303800	Weak transcription	Adipose Nuclei	Adipose
38	chr3:101297400-101314400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:101297600-101315200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:101297800-101303600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:101297800-101304600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr3:101297800-101305200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr3:101297800-101312400	Weak transcription	Brain Angular Gyrus	brain
44	chr3:101298000-101304400	Weak transcription	Fetal Lung	lung
45	chr3:101298600-101316400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr3:101298800-101303600	Weak transcription	Primary T cells from cord blood	blood
47	chr3:101298800-101304800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr3:101298800-101304800	Weak transcription	Pancreas	Pancrea
49	chr3:101298800-101305000	Weak transcription	Spleen	Spleen
50	chr3:101298800-101312000	Weak transcription	Fetal Heart	heart

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