Variant report

Variant	rs10936707
Chromosome Location	chr3:101324063-101324064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11708845	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11710533	0.82[ASN][1000 genomes]
rs11715368	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11720560	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11917569	0.81[ASN][1000 genomes]
rs11917682	0.80[ASN][1000 genomes]
rs11923273	0.85[ASN][1000 genomes]
rs12629658	0.81[ASN][1000 genomes]
rs12639028	0.83[ASN][1000 genomes]
rs17345528	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17345786	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17508319	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3762729	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3804775	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3804778	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55641278	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58907984	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60837174	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6791964	0.84[EUR][1000 genomes]
rs72946021	0.82[EUR][1000 genomes]
rs73863360	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641261	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs997739	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv963347	chr3:101318121-101342898	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10936707	SENP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
2	chr3:101305800-101324400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:101310400-101324800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:101311000-101329800	Weak transcription	Thymus	Thymus
5	chr3:101311400-101324400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:101311400-101324600	Weak transcription	Esophagus	oesophagus
7	chr3:101311400-101329600	Weak transcription	K562	blood
8	chr3:101313400-101324600	Weak transcription	HSMM	muscle
9	chr3:101314800-101328200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:101316400-101331800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:101318600-101324600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:101318600-101326400	Weak transcription	A549	lung
13	chr3:101318600-101331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:101322600-101324600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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