Variant report

Variant	rs58907984
Chromosome Location	chr3:101305170-101305171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:101305159-101305343	A549	lung:	n/a	n/a
2	GATA2	chr3:101305023-101305310	SH-SY5Y	brain:	n/a	n/a
3	POLR2A	chr3:101305160-101305272	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr3:101305154-101305471	HepG2	liver:	n/a	n/a
5	POLR2A	chr3:101305030-101305887	HepG2	liver:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:101303692..101306501-chr3:101349229..101351407,2	K562	blood:
2	chr3:101303003..101304560-chr3:101304626..101306294,2	MCF-7	breast:
3	chr3:101303155..101306104-chr3:101309279..101311204,2	K562	blood:
4	chr3:101303983..101305562-chr3:101306033..101309027,2	K562	blood:

No data

Variant related genes	Relation type
PCNP	TF binding region
ENSG00000081154	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10936707	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11708616	0.84[EUR][1000 genomes]
rs11708845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710533	0.82[ASN][1000 genomes]
rs11711808	0.85[EUR][1000 genomes]
rs11715368	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11720560	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11917569	0.81[ASN][1000 genomes]
rs11917682	0.81[ASN][1000 genomes]
rs11923273	0.85[ASN][1000 genomes]
rs12629658	0.81[ASN][1000 genomes]
rs12638796	0.82[EUR][1000 genomes]
rs12639028	0.84[ASN][1000 genomes]
rs17345528	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17345786	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17508319	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3762729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804778	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55641278	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55710435	0.82[EUR][1000 genomes]
rs57880921	0.82[EUR][1000 genomes]
rs58835747	0.85[EUR][1000 genomes]
rs60837174	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6791964	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72944107	0.82[EUR][1000 genomes]
rs72946021	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73863360	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641261	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs997739	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58907984	SENP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101294000-101305200	Weak transcription	Esophagus	oesophagus
2	chr3:101294000-101312200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:101294200-101309000	Weak transcription	Colonic Mucosa	Colon
4	chr3:101294200-101310000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:101294400-101309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:101294800-101305200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:101295000-101309400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:101295000-101310200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:101295200-101306800	Weak transcription	Psoas Muscle	Psoas
11	chr3:101295800-101305200	Weak transcription	Gastric	stomach
12	chr3:101295800-101315000	Weak transcription	Right Atrium	heart
13	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
14	chr3:101296200-101305200	Weak transcription	Fetal Brain Male	brain
15	chr3:101296200-101310000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:101296400-101305200	Weak transcription	Thymus	Thymus
17	chr3:101296400-101316400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:101296600-101311600	Weak transcription	Stomach Mucosa	stomach
19	chr3:101296600-101315000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:101296800-101318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:101297400-101314400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:101297600-101315200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:101297800-101305200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:101297800-101312400	Weak transcription	Brain Angular Gyrus	brain
25	chr3:101298600-101316400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:101298800-101312000	Weak transcription	Fetal Heart	heart
27	chr3:101298800-101312800	Weak transcription	Small Intestine	intestine
28	chr3:101299000-101305200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:101299000-101309400	Weak transcription	Ovary	ovary
30	chr3:101300000-101305200	Weak transcription	Brain Anterior Caudate	brain
31	chr3:101300000-101306000	Strong transcription	Fetal Intestine Small	intestine
32	chr3:101300200-101317800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:101300600-101305200	Weak transcription	Right Ventricle	heart
34	chr3:101301000-101311400	Strong transcription	Fetal Stomach	stomach
35	chr3:101301000-101313400	Strong transcription	HSMM	muscle
36	chr3:101301000-101315400	Strong transcription	Dnd41	blood
37	chr3:101301200-101307200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:101301200-101313000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr3:101301200-101315400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:101301400-101306400	Strong transcription	Stomach Smooth Muscle	stomach
41	chr3:101301400-101313600	Strong transcription	Primary B cells from cord blood	blood
42	chr3:101301400-101316400	Strong transcription	Primary B cells from peripheral blood	blood
43	chr3:101301600-101307200	Strong transcription	Duodenum Mucosa	Duodenum
44	chr3:101301600-101307200	Strong transcription	Fetal Intestine Large	intestine
45	chr3:101301600-101309800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:101301600-101314600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr3:101301600-101315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:101301600-101317000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:101301800-101305800	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:101301800-101307200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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