Variant report

Variant	rs11720560
Chromosome Location	chr3:101328484-101328485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10936707	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11708845	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11710533	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11711808	0.81[EUR][1000 genomes]
rs11715368	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11917569	0.86[ASN][1000 genomes]
rs11917682	0.85[ASN][1000 genomes]
rs11923273	0.90[ASN][1000 genomes]
rs12629658	0.86[ASN][1000 genomes]
rs12629954	0.80[ASN][1000 genomes]
rs12635128	0.81[ASN][1000 genomes]
rs12639028	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17345528	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17345786	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17508319	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36060163	0.80[ASN][1000 genomes]
rs3762729	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3804775	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3804778	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55641278	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58835747	0.81[EUR][1000 genomes]
rs58907984	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60837174	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6791964	0.86[EUR][1000 genomes]
rs72946021	0.85[EUR][1000 genomes]
rs73863360	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7641261	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7645391	0.80[ASN][1000 genomes]
rs997739	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv963347	chr3:101318121-101342898	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101311000-101329800	Weak transcription	Thymus	Thymus
2	chr3:101311400-101329600	Weak transcription	K562	blood
3	chr3:101316400-101331800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:101318600-101331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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