Variant report

Variant	rs7641261
Chromosome Location	chr3:101279006-101279007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101277954..101280498-chr3:101281065..101283887,2	MCF-7	breast:
2	chr3:101235226..101237848-chr3:101277796..101281104,3	MCF-7	breast:
3	chr3:101240576..101242583-chr3:101278583..101280500,3	MCF-7	breast:
4	chr3:101230728..101233883-chr3:101278974..101284573,9	K562	blood:
5	chr3:101251684..101253784-chr3:101277583..101280668,3	K562	blood:

Variant related genes	Relation type
ENSG00000175841	Chromatin interaction
ENSG00000138468	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10936707	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11708616	0.90[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11708845	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11710016	0.90[CEU][hapmap]
rs11711808	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs11715368	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11720560	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12638137	0.81[EUR][1000 genomes]
rs12638796	0.85[EUR][1000 genomes]
rs17345528	0.95[CEU][hapmap];0.84[CHB][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17345786	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17508319	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3762729	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3804775	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3804778	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55641278	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55710435	0.85[EUR][1000 genomes]
rs57880921	0.85[EUR][1000 genomes]
rs58835747	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58907984	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59359251	0.81[EUR][1000 genomes]
rs60837174	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791964	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72944107	0.85[EUR][1000 genomes]
rs72946021	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73863360	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs997739	1.00[CEU][hapmap];0.84[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7641261	SENP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101274600-101280400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:101276000-101280000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:101276600-101280400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:101277000-101279600	Weak transcription	HepG2	liver
5	chr3:101277600-101279800	Weak transcription	K562	blood
6	chr3:101278400-101279200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:101278600-101280000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:101278800-101279200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:101278800-101279800	Weak transcription	Fetal Intestine Large	intestine
10	chr3:101278800-101279800	Weak transcription	Right Atrium	heart
11	chr3:101279000-101280000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:101279000-101280200	Enhancers	Fetal Heart	heart

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