Variant report

Variant	rs59364110
Chromosome Location	chr15:51272645-51272646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs16963979	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28865017	1.00[AMR][1000 genomes]
rs55683982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55735813	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55742119	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55763666	1.00[AMR][1000 genomes]
rs55912100	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55920356	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55940433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55973448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56010315	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56017509	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56046825	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56049414	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56056949	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56121717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56222335	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56273151	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56283133	1.00[AMR][1000 genomes]
rs56289716	1.00[AMR][1000 genomes]
rs56374503	1.00[AMR][1000 genomes]
rs56813592	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57221782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57305511	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57499524	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57831362	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57949904	1.00[AMR][1000 genomes]
rs58651255	1.00[AMR][1000 genomes]
rs59067851	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59155793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59681404	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59843670	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59865784	1.00[AMR][1000 genomes]
rs60037205	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60253924	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60297574	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60700183	1.00[AMR][1000 genomes]
rs60775199	1.00[AMR][1000 genomes]
rs61106666	1.00[AMR][1000 genomes]
rs61698311	1.00[AMR][1000 genomes]
rs6493467	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7171301	1.00[AMR][1000 genomes]
rs7174066	1.00[AMR][1000 genomes]
rs7175547	1.00[AMR][1000 genomes]
rs74012820	1.00[AMR][1000 genomes]
rs74012821	1.00[AMR][1000 genomes]
rs74013114	1.00[AMR][1000 genomes]
rs74013115	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013125	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013128	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013130	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013132	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015214	1.00[AMR][1000 genomes]
rs74015215	1.00[AMR][1000 genomes]
rs74015226	1.00[AMR][1000 genomes]
rs74015228	1.00[AMR][1000 genomes]
rs74015229	1.00[AMR][1000 genomes]
rs74015230	1.00[AMR][1000 genomes]
rs74015232	1.00[AMR][1000 genomes]
rs74015235	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015236	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
5	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv428636	chr15:51154834-51298044	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv569403	chr15:51191421-51304373	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv1038778	chr15:51196641-51356728	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv904214	chr15:51204364-51535192	Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv569404	chr15:51234595-51294995	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1049644	chr15:51265447-51560445	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51210600-51298400	Weak transcription	Stomach Mucosa	stomach
2	chr15:51243800-51283000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:51252400-51283800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:51257600-51272800	Weak transcription	Pancreas	Pancrea
5	chr15:51261600-51272800	Weak transcription	Colonic Mucosa	Colon
6	chr15:51261600-51295600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:51261600-51298200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:51263000-51304800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:51263200-51276000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:51263400-51281000	Weak transcription	Fetal Heart	heart
11	chr15:51263600-51287200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr15:51263600-51293600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:51263600-51296400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:51263600-51297800	Weak transcription	NHLF	lung
15	chr15:51263600-51299200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:51263600-51300200	Weak transcription	Small Intestine	intestine
17	chr15:51263600-51301200	Weak transcription	HepG2	liver
18	chr15:51263600-51303000	Weak transcription	HUVEC	blood vessel
19	chr15:51263800-51275400	Weak transcription	NH-A	brain
20	chr15:51263800-51296200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr15:51263800-51296600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:51263800-51300400	Weak transcription	Right Ventricle	heart
23	chr15:51264400-51283200	Weak transcription	Brain Substantia Nigra	brain
24	chr15:51264400-51294200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:51264600-51296600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:51265000-51272800	Weak transcription	Thymus	Thymus
27	chr15:51265000-51275800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:51265200-51272800	Weak transcription	Aorta	Aorta
29	chr15:51265200-51272800	Weak transcription	Esophagus	oesophagus
30	chr15:51265200-51272800	Weak transcription	Lung	lung
31	chr15:51265200-51272800	Weak transcription	Ovary	ovary
32	chr15:51265200-51272800	Weak transcription	Spleen	Spleen
33	chr15:51265200-51273000	Weak transcription	Fetal Thymus	thymus
34	chr15:51265200-51274000	Strong transcription	Primary B cells from cord blood	blood
35	chr15:51265200-51275400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:51265200-51276200	Weak transcription	A549	lung
37	chr15:51265200-51292600	Weak transcription	Brain Angular Gyrus	brain
38	chr15:51265200-51296400	Weak transcription	Brain Germinal Matrix	brain
39	chr15:51265200-51302400	Weak transcription	Brain Hippocampus Middle	brain
40	chr15:51265200-51315600	Weak transcription	Gastric	stomach
41	chr15:51265400-51272800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:51265400-51275400	Weak transcription	HSMM	muscle
43	chr15:51265400-51302400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:51265800-51272800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr15:51266000-51272800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:51266000-51272800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr15:51266200-51273200	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr15:51266200-51285800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:51266800-51272800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:51266800-51272800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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