Variant report

Variant	rs59865784
Chromosome Location	chr15:51189756-51189757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51187671..51190054-chr15:51190212..51192849,2	K562	blood:
2	chr15:50649363..50652046-chr15:51189573..51192655,3	MCF-7	breast:
3	chr15:51188372..51190064-chr15:51192876..51195738,3	K562	blood:
4	chr15:51189648..51191735-chr15:51199427..51201147,2	MCF-7	breast:
5	chr15:51176620..51178151-chr15:51189371..51192335,2	K562	blood:
6	chr15:51186902..51189872-chr15:51192876..51194518,2	K562	blood:

Variant related genes	Relation type
ENSG00000081014	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs16963979	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28865017	1.00[AMR][1000 genomes]
rs55683982	1.00[AMR][1000 genomes]
rs55735813	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55742119	1.00[AMR][1000 genomes]
rs55763666	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55912100	1.00[AMR][1000 genomes]
rs55920356	1.00[AMR][1000 genomes]
rs55940433	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55973448	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56010315	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56017509	1.00[AMR][1000 genomes]
rs56046825	1.00[AMR][1000 genomes]
rs56049414	1.00[AMR][1000 genomes]
rs56056949	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56121717	1.00[AMR][1000 genomes]
rs56222335	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56273151	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56283133	1.00[AMR][1000 genomes]
rs56289716	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56374503	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56813592	1.00[AMR][1000 genomes]
rs57221782	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57305511	1.00[AMR][1000 genomes]
rs57499524	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57831362	1.00[AMR][1000 genomes]
rs57949904	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58651255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59067851	1.00[AMR][1000 genomes]
rs59155793	1.00[AMR][1000 genomes]
rs59364110	1.00[AMR][1000 genomes]
rs59681404	1.00[AMR][1000 genomes]
rs59843670	1.00[AMR][1000 genomes]
rs59853681	0.92[AFR][1000 genomes]
rs60037205	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60253924	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60297574	1.00[AMR][1000 genomes]
rs60700183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60775199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61106666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61698311	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493467	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7171301	1.00[AMR][1000 genomes]
rs7174066	1.00[AMR][1000 genomes]
rs7175547	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012820	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012821	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013114	1.00[AMR][1000 genomes]
rs74013115	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013125	1.00[AMR][1000 genomes]
rs74013127	1.00[AMR][1000 genomes]
rs74013128	1.00[AMR][1000 genomes]
rs74013130	1.00[AMR][1000 genomes]
rs74013132	1.00[AMR][1000 genomes]
rs74015214	1.00[AMR][1000 genomes]
rs74015215	1.00[AMR][1000 genomes]
rs74015226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015232	1.00[AMR][1000 genomes]
rs74015235	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015236	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
6	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
8	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
9	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv516168	chr15:51114437-51217361	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	nsv428636	chr15:51154834-51298044	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51177800-51199200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:51177800-51199600	Weak transcription	Ovary	ovary
3	chr15:51179000-51199200	Weak transcription	Brain Angular Gyrus	brain
4	chr15:51183800-51199200	Weak transcription	Brain Substantia Nigra	brain
5	chr15:51185800-51199800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:51187200-51199000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:51187200-51199200	Weak transcription	Placenta	Placenta
8	chr15:51188400-51199200	Weak transcription	Fetal Lung	lung
9	chr15:51189600-51189800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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