Variant report

Variant	rs60775199
Chromosome Location	chr15:51179868-51179869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51176979..51180496-chr15:51199774..51202562,4	MCF-7	breast:
2	chr15:51164794..51166513-chr15:51178274..51180679,2	MCF-7	breast:
3	chr15:51056877..51058773-chr15:51177963..51180955,2	K562	blood:
4	chr15:51178079..51179990-chr15:51193017..51195574,2	MCF-7	breast:
5	chr15:51176719..51180099-chr15:51197525..51202342,6	K562	blood:
6	chr15:51175847..51180099-chr15:51197260..51201772,6	K562	blood:

Variant related genes	Relation type
ENSG00000138600	Chromatin interaction
ENSG00000081014	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs16963979	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28865017	1.00[AMR][1000 genomes]
rs55683982	1.00[AMR][1000 genomes]
rs55735813	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55742119	1.00[AMR][1000 genomes]
rs55763666	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55912100	1.00[AMR][1000 genomes]
rs55920356	1.00[AMR][1000 genomes]
rs55940433	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55973448	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56010315	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56017509	1.00[AMR][1000 genomes]
rs56046825	1.00[AMR][1000 genomes]
rs56049414	1.00[AMR][1000 genomes]
rs56056949	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56121717	1.00[AMR][1000 genomes]
rs56222335	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56273151	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56283133	1.00[AMR][1000 genomes]
rs56289716	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56374503	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56813592	1.00[AMR][1000 genomes]
rs57221782	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57305511	1.00[AMR][1000 genomes]
rs57499524	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57831362	1.00[AMR][1000 genomes]
rs57949904	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58651255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59067851	1.00[AMR][1000 genomes]
rs59155793	1.00[AMR][1000 genomes]
rs59364110	1.00[AMR][1000 genomes]
rs59681404	1.00[AMR][1000 genomes]
rs59843670	1.00[AMR][1000 genomes]
rs59853681	0.92[AFR][1000 genomes]
rs59865784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60037205	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60253924	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60297574	1.00[AMR][1000 genomes]
rs60700183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61106666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61698311	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493467	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7171301	1.00[AMR][1000 genomes]
rs7174066	1.00[AMR][1000 genomes]
rs7175547	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012820	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012821	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013114	1.00[AMR][1000 genomes]
rs74013115	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013125	1.00[AMR][1000 genomes]
rs74013127	1.00[AMR][1000 genomes]
rs74013128	1.00[AMR][1000 genomes]
rs74013130	1.00[AMR][1000 genomes]
rs74013132	1.00[AMR][1000 genomes]
rs74015214	1.00[AMR][1000 genomes]
rs74015215	1.00[AMR][1000 genomes]
rs74015226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015232	1.00[AMR][1000 genomes]
rs74015235	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015236	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
10	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
12	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
13	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
14	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
15	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
16	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
17	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
18	nsv516168	chr15:51114437-51217361	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
19	nsv428636	chr15:51154834-51298044	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51169200-51180000	Weak transcription	Right Atrium	heart
2	chr15:51177200-51183000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:51177400-51180400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:51177400-51181600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:51177800-51181400	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:51177800-51199200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:51177800-51199600	Weak transcription	Ovary	ovary
8	chr15:51178200-51180400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:51178200-51180600	Weak transcription	HMEC	breast
10	chr15:51178200-51180800	Enhancers	Osteobl	bone
11	chr15:51178200-51181600	Enhancers	GM12878-XiMat	blood
12	chr15:51178400-51180400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:51178600-51180200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr15:51178600-51180800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:51178600-51181400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:51179000-51199200	Weak transcription	Brain Angular Gyrus	brain
17	chr15:51179200-51180600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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