Variant report

Variant	rs59367317
Chromosome Location	chr17:50496565-50496566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58401983	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225225	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73989309	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8079100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8081651	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492317	chr17:50067819-50774475	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1064285	chr17:50290372-50507829	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv543385	chr17:50290372-50507829	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv528447	chr17:50323521-51118173	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv428345	chr17:50348160-50511536	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1057173	chr17:50448593-50808216	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2830033	chr17:50462226-50506926	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv833483	chr17:50475617-50652500	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1065519	chr17:50494829-50585822	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:50496200-50496600	Enhancers	Gastric	stomach
2	chr17:50496200-50496600	Enhancers	Pancreas	Pancrea
3	chr17:50496200-50496600	Enhancers	Psoas Muscle	Psoas
4	chr17:50496200-50496800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr17:50496200-50496800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr17:50496200-50497400	Enhancers	HepG2	liver
7	chr17:50496200-50497600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr17:50496200-50497600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr17:50496200-50497600	Enhancers	Liver	Liver
10	chr17:50496400-50496800	Enhancers	Brain Angular Gyrus	brain
11	chr17:50496400-50497000	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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