Variant report

Variant	rs59377579
Chromosome Location	chr11:35370337-35370338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35367767..35370379-chr11:35370546..35372523,3	K562	blood:
2	chr11:35369719..35371293-chr11:35371754..35374136,2	MCF-7	breast:
3	chr11:35360349..35364651-chr11:35366832..35371612,5	K562	blood:
4	chr11:35370125..35373303-chr11:35374872..35377145,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11033078	0.99[ASN][1000 genomes]
rs11033085	0.97[ASN][1000 genomes]
rs11033088	1.00[ASN][1000 genomes]
rs11033091	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11033093	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12274790	1.00[ASN][1000 genomes]
rs12290517	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294219	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1320442	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1320443	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1885344	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3847618	0.99[ASN][1000 genomes]
rs61454047	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7111949	1.00[ASN][1000 genomes]
rs7114489	1.00[ASN][1000 genomes]
rs7127728	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35362600-35372800	Weak transcription	NHLF	lung
2	chr11:35364600-35371600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:35365600-35370400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr11:35366000-35370400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:35366000-35370600	Enhancers	HepG2	liver
6	chr11:35366200-35370800	Enhancers	Stomach Smooth Muscle	stomach
7	chr11:35366200-35371000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:35366200-35372000	Weak transcription	K562	blood
9	chr11:35366800-35371600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:35367000-35385400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:35367200-35370600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:35367200-35370600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:35367200-35370800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:35367200-35371200	Weak transcription	Fetal Thymus	thymus
15	chr11:35367200-35374000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:35367200-35374000	Weak transcription	Gastric	stomach
17	chr11:35367200-35380200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:35367600-35371600	Enhancers	NHDF-Ad	bronchial
19	chr11:35367800-35370800	Enhancers	Placenta	Placenta
20	chr11:35368000-35372400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:35368400-35371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr11:35368400-35374000	Weak transcription	Left Ventricle	heart
23	chr11:35368600-35371000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:35368600-35371000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:35368600-35379800	Weak transcription	Brain Anterior Caudate	brain
26	chr11:35369000-35373800	Weak transcription	Right Atrium	heart
27	chr11:35369400-35371200	Weak transcription	Hela-S3	cervix
28	chr11:35369400-35371600	Enhancers	Primary T cells fromperipheralblood	blood
29	chr11:35369400-35373800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:35369600-35370800	Enhancers	Pancreas	Pancrea
31	chr11:35369600-35372000	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr11:35369600-35372200	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr11:35369600-35372400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr11:35369600-35372800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:35369800-35370600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:35369800-35370800	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:35369800-35371800	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr11:35369800-35372800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:35369800-35373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:35369800-35374000	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:35369800-35374200	Weak transcription	Liver	Liver
42	chr11:35370000-35370600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr11:35370000-35371800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:35370000-35371800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:35370000-35372000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr11:35370000-35372800	Weak transcription	NH-A	brain
47	chr11:35370000-35373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:35370000-35373400	Weak transcription	NHEK	skin
49	chr11:35370200-35370800	Enhancers	Primary T cells from cord blood	blood
50	chr11:35370200-35371800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links