Variant report

Variant	rs59393210
Chromosome Location	chr6:142149930-142149931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2024659	1.00[AMR][1000 genomes]
rs57551891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57899612	1.00[AMR][1000 genomes]
rs58223604	1.00[AMR][1000 genomes]
rs58462887	1.00[AMR][1000 genomes]
rs59755841	1.00[AMR][1000 genomes]
rs61181750	1.00[AMR][1000 genomes]
rs73583791	1.00[AMR][1000 genomes]
rs73583797	1.00[AMR][1000 genomes]
rs73585704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585705	1.00[AMR][1000 genomes]
rs73585708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585743	1.00[AMR][1000 genomes]
rs73585780	1.00[AMR][1000 genomes]
rs73587819	1.00[AMR][1000 genomes]
rs73587828	1.00[AMR][1000 genomes]
rs73587859	1.00[AMR][1000 genomes]
rs73587870	1.00[AMR][1000 genomes]
rs73587886	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032184	chr6:141909953-142234993	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1032444	chr6:142066183-142199093	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv830823	chr6:142111420-142305417	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv464066	chr6:142130009-142236578	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv604790	chr6:142130009-142236578	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886728	chr6:142130009-142245981	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1029504	chr6:142131846-142333198	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv538458	chr6:142131846-142333198	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3434839	chr6:142133308-142165107	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1017195	chr6:142142454-142336722	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142145800-142150200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:142145800-142150400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:142148600-142150400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:142148600-142152400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:142148800-142152400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:142148800-142152400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:142149800-142150400	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:142149800-142151600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:142149800-142152400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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