Variant report

Variant	rs57899612
Chromosome Location	chr6:142088480-142088481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2024659	1.00[AMR][1000 genomes]
rs57551891	1.00[AMR][1000 genomes]
rs58140642	1.00[AMR][1000 genomes]
rs58223604	1.00[AMR][1000 genomes]
rs58462887	1.00[AMR][1000 genomes]
rs59393210	1.00[AMR][1000 genomes]
rs59755841	1.00[AMR][1000 genomes]
rs61181750	1.00[AMR][1000 genomes]
rs73579589	1.00[AMR][1000 genomes]
rs73583791	1.00[AMR][1000 genomes]
rs73583797	1.00[AMR][1000 genomes]
rs73585704	1.00[AMR][1000 genomes]
rs73585705	1.00[AMR][1000 genomes]
rs73585708	1.00[AMR][1000 genomes]
rs73585710	1.00[AMR][1000 genomes]
rs73585722	1.00[AMR][1000 genomes]
rs73585743	1.00[AMR][1000 genomes]
rs73585780	1.00[AMR][1000 genomes]
rs73587819	1.00[AMR][1000 genomes]
rs73587828	1.00[AMR][1000 genomes]
rs73587859	1.00[AMR][1000 genomes]
rs73587870	1.00[AMR][1000 genomes]
rs73587886	1.00[AMR][1000 genomes]
rs9484532	1.00[AMR][1000 genomes]
rs9496086	1.00[AMR][1000 genomes]
rs9496090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025706	chr6:141909953-142131906	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538456	chr6:141909953-142131906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1032184	chr6:141909953-142234993	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1025564	chr6:141972503-142101658	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538457	chr6:141972503-142101658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1019046	chr6:142032704-142092295	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1032444	chr6:142066183-142199093	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv604789	chr6:142074024-142112455	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv523425	chr6:142074024-142130009	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv525384	chr6:142074024-142130009	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142079800-142097600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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