Variant report
| Variant | rs73579589 |
|---|---|
| Chromosome Location | chr6:141879589-141879590 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:141872370..141875304-chr6:141879080..141881515,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs57899612 | 1.00[AMR][1000 genomes] |
| rs58140642 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59795248 | 1.00[AMR][1000 genomes] |
| rs61247790 | 1.00[AMR][1000 genomes] |
| rs73575888 | 1.00[AMR][1000 genomes] |
| rs73575895 | 1.00[AMR][1000 genomes] |
| rs73575900 | 1.00[AMR][1000 genomes] |
| rs73575901 | 1.00[AMR][1000 genomes] |
| rs73577503 | 1.00[AMR][1000 genomes] |
| rs73577512 | 1.00[AMR][1000 genomes] |
| rs73577514 | 1.00[AMR][1000 genomes] |
| rs73577520 | 1.00[AMR][1000 genomes] |
| rs73577522 | 1.00[AMR][1000 genomes] |
| rs73577523 | 1.00[AMR][1000 genomes] |
| rs73577526 | 1.00[AMR][1000 genomes] |
| rs73577527 | 1.00[AMR][1000 genomes] |
| rs73577528 | 1.00[AMR][1000 genomes] |
| rs73577540 | 1.00[AMR][1000 genomes] |
| rs73577576 | 1.00[AMR][1000 genomes] |
| rs73579515 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73579524 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73579532 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73579559 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73579570 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73579578 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73583791 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9484532 | 1.00[AMR][1000 genomes] |
| rs9496086 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9496090 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029550 | chr6:141372610-142029669 | ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015835 | chr6:141713451-142233317 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv538455 | chr6:141713451-142233317 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | esv2755719 | chr6:141721907-142123546 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:141875400-141883400 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
