Variant report

Variant	rs59795248
Chromosome Location	chr6:141724423-141724424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:141724021..141726766-chr6:141733635..141735399,2	K562	blood:
2	chr6:141723648..141725230-chr6:141726285..141728524,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs58134179	1.00[AMR][1000 genomes]
rs58140642	1.00[AMR][1000 genomes]
rs61247790	1.00[AMR][1000 genomes]
rs73570214	1.00[AMR][1000 genomes]
rs73570225	1.00[AMR][1000 genomes]
rs73573967	1.00[AMR][1000 genomes]
rs73575888	1.00[AMR][1000 genomes]
rs73575895	1.00[AMR][1000 genomes]
rs73575900	1.00[AMR][1000 genomes]
rs73575901	1.00[AMR][1000 genomes]
rs73577503	1.00[AMR][1000 genomes]
rs73577512	1.00[AMR][1000 genomes]
rs73577514	1.00[AMR][1000 genomes]
rs73577520	1.00[AMR][1000 genomes]
rs73577522	1.00[AMR][1000 genomes]
rs73577523	1.00[AMR][1000 genomes]
rs73577526	1.00[AMR][1000 genomes]
rs73577527	1.00[AMR][1000 genomes]
rs73577528	1.00[AMR][1000 genomes]
rs73577540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577576	1.00[AMR][1000 genomes]
rs73579515	1.00[AMR][1000 genomes]
rs73579524	1.00[AMR][1000 genomes]
rs73579532	1.00[AMR][1000 genomes]
rs73579559	1.00[AMR][1000 genomes]
rs73579570	1.00[AMR][1000 genomes]
rs73579578	1.00[AMR][1000 genomes]
rs73579589	1.00[AMR][1000 genomes]
rs73588065	1.00[AMR][1000 genomes]
rs73588072	1.00[AMR][1000 genomes]
rs73588083	1.00[AMR][1000 genomes]
rs9484532	1.00[AMR][1000 genomes]
rs9496086	1.00[AMR][1000 genomes]
rs9496090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1028540	chr6:141121435-141740831	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv604780	chr6:141126080-141740918	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1033387	chr6:141130072-141742682	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1030686	chr6:141130072-141749079	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1024981	chr6:141134064-141742682	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1029033	chr6:141156919-141740831	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv886720	chr6:141328865-141725335	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv886721	chr6:141328865-141739208	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv886726	chr6:141428255-141764919	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv886727	chr6:141610933-141793547	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141717200-141729400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:141721800-141724800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:141722200-141725600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:141722400-141724600	Enhancers	Aorta	Aorta
5	chr6:141722400-141724800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:141723400-141724600	Weak transcription	HSMMtube	muscle
7	chr6:141723800-141725400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:141724000-141724600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:141724000-141724800	Flanking Active TSS	Psoas Muscle	Psoas
10	chr6:141724000-141724800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr6:141724000-141724800	Enhancers	Dnd41	blood
12	chr6:141724000-141726000	Enhancers	HSMM	muscle
13	chr6:141724200-141724600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:141724200-141724600	Enhancers	Esophagus	oesophagus
15	chr6:141724200-141724600	Flanking Active TSS	Right Atrium	heart
16	chr6:141724200-141724600	Enhancers	Spleen	Spleen
17	chr6:141724200-141724800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr6:141724200-141725000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:141724200-141725400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:141724200-141725400	Active TSS	Left Ventricle	heart
21	chr6:141724200-141725400	Active TSS	Right Ventricle	heart
22	chr6:141724200-141725600	Enhancers	NHDF-Ad	bronchial
23	chr6:141724400-141724600	Enhancers	Brain Germinal Matrix	brain
24	chr6:141724400-141724800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:141724400-141724800	Enhancers	Fetal Heart	heart
26	chr6:141724400-141724800	Enhancers	Fetal Muscle Leg	muscle
27	chr6:141724400-141725200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr6:141724400-141725400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:141724400-141725600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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