Variant report

Variant	rs9496086
Chromosome Location	chr6:141900499-141900500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs57899612	1.00[AMR][1000 genomes]
rs58140642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59795248	1.00[AMR][1000 genomes]
rs61247790	1.00[AMR][1000 genomes]
rs73575888	1.00[AMR][1000 genomes]
rs73575895	1.00[AMR][1000 genomes]
rs73575900	1.00[AMR][1000 genomes]
rs73575901	1.00[AMR][1000 genomes]
rs73577503	1.00[AMR][1000 genomes]
rs73577512	1.00[AMR][1000 genomes]
rs73577514	1.00[AMR][1000 genomes]
rs73577520	1.00[AMR][1000 genomes]
rs73577522	1.00[AMR][1000 genomes]
rs73577523	1.00[AMR][1000 genomes]
rs73577526	1.00[AMR][1000 genomes]
rs73577527	1.00[AMR][1000 genomes]
rs73577528	1.00[AMR][1000 genomes]
rs73577540	1.00[AMR][1000 genomes]
rs73577576	1.00[AMR][1000 genomes]
rs73579515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484532	1.00[AMR][1000 genomes]
rs9496090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141898200-141901600	Weak transcription	NHDF-Ad	bronchial
2	chr6:141898800-141901400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:141899600-141901400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:141899600-141901400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:141899800-141902000	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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