Variant report

Variant	rs58223604
Chromosome Location	chr6:142285716-142285717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs2024659	1.00[AMR][1000 genomes]
rs2232294	1.00[AMR][1000 genomes]
rs2232299	1.00[AMR][1000 genomes]
rs57551891	1.00[AMR][1000 genomes]
rs57899612	1.00[AMR][1000 genomes]
rs58462887	1.00[AMR][1000 genomes]
rs58545531	1.00[AMR][1000 genomes]
rs59393210	1.00[AMR][1000 genomes]
rs59755841	1.00[AMR][1000 genomes]
rs61181750	1.00[AMR][1000 genomes]
rs73572396	1.00[AMR][1000 genomes]
rs73572398	1.00[AMR][1000 genomes]
rs73573650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573653	1.00[AMR][1000 genomes]
rs73573665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579801	1.00[AMR][1000 genomes]
rs73581604	1.00[AMR][1000 genomes]
rs73581617	1.00[AMR][1000 genomes]
rs73581623	1.00[AMR][1000 genomes]
rs73583797	1.00[AMR][1000 genomes]
rs73585704	1.00[AMR][1000 genomes]
rs73585705	1.00[AMR][1000 genomes]
rs73585708	1.00[AMR][1000 genomes]
rs73585710	1.00[AMR][1000 genomes]
rs73585722	1.00[AMR][1000 genomes]
rs73585743	1.00[AMR][1000 genomes]
rs73585780	1.00[AMR][1000 genomes]
rs73587819	1.00[AMR][1000 genomes]
rs73587828	1.00[AMR][1000 genomes]
rs73587859	1.00[AMR][1000 genomes]
rs73587870	1.00[AMR][1000 genomes]
rs73587886	1.00[AMR][1000 genomes]
rs9484604	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830823	chr6:142111420-142305417	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029504	chr6:142131846-142333198	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538458	chr6:142131846-142333198	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1017195	chr6:142142454-142336722	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604792	chr6:142192725-142399251	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv886730	chr6:142214093-142299345	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1019170	chr6:142234933-142397088	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv464068	chr6:142263201-142316177	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3383051	chr6:142278308-142302837	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3355154	chr6:142278308-142305393	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142284000-142286800	Enhancers	Placenta	Placenta
2	chr6:142284400-142287600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr6:142284400-142292000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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