Variant report

Variant	rs73581623
Chromosome Location	chr6:142478509-142478510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:142475480..142479893-chr6:142481592..142484800,4	K562	blood:
2	chr6:142476386..142478985-chr6:142483280..142485789,2	MCF-7	breast:
3	chr6:142470533..142472236-chr6:142476885..142478577,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2232294	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2232299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58223604	1.00[AMR][1000 genomes]
rs58545531	1.00[AMR][1000 genomes]
rs73572396	1.00[AMR][1000 genomes]
rs73572398	1.00[AMR][1000 genomes]
rs73573650	1.00[AMR][1000 genomes]
rs73573653	1.00[AMR][1000 genomes]
rs73573665	1.00[AMR][1000 genomes]
rs73573688	1.00[AMR][1000 genomes]
rs73574224	1.00[AMR][1000 genomes]
rs73574240	1.00[AMR][1000 genomes]
rs73576259	1.00[AMR][1000 genomes]
rs73578320	1.00[AMR][1000 genomes]
rs73578323	1.00[AMR][1000 genomes]
rs73579801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581604	1.00[AMR][1000 genomes]
rs73581617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73587886	1.00[AMR][1000 genomes]
rs73588179	1.00[AMR][1000 genomes]
rs73590005	1.00[AMR][1000 genomes]
rs73590065	1.00[AMR][1000 genomes]
rs73590081	1.00[AMR][1000 genomes]
rs9484604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886732	chr6:142290338-142536049	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv886733	chr6:142316672-142514226	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv886734	chr6:142347611-142523865	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv830824	chr6:142361107-142544929	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv886736	chr6:142365171-142523865	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	esv3451363	chr6:142478305-142478655	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142468800-142488000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:142469200-142483400	Weak transcription	Aorta	Aorta
3	chr6:142469200-142487800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:142469600-142487800	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:142469600-142487800	Weak transcription	Thymus	Thymus
6	chr6:142469800-142481200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:142469800-142487600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:142470000-142481400	Weak transcription	Gastric	stomach
9	chr6:142470000-142484000	Weak transcription	Psoas Muscle	Psoas
10	chr6:142470000-142486400	Weak transcription	Fetal Intestine Small	intestine
11	chr6:142470200-142484000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:142470200-142487800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:142470200-142488200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:142470200-142488200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:142470200-142491800	Weak transcription	Fetal Stomach	stomach
16	chr6:142470200-142493600	Weak transcription	HSMMtube	muscle
17	chr6:142470200-142504000	Weak transcription	Spleen	Spleen
18	chr6:142470400-142487400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:142470400-142487600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:142470400-142487600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:142470400-142487600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:142470600-142483800	Weak transcription	Fetal Lung	lung
23	chr6:142470600-142486000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:142470600-142487600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:142470800-142481400	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:142470800-142487600	Weak transcription	Fetal Intestine Large	intestine
27	chr6:142470800-142487800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:142471600-142485600	Weak transcription	Brain Germinal Matrix	brain
29	chr6:142472000-142487600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:142472400-142487800	Weak transcription	Left Ventricle	heart
31	chr6:142472400-142487800	Weak transcription	Ovary	ovary
32	chr6:142472400-142488200	Weak transcription	Primary B cells from cord blood	blood
33	chr6:142472800-142481400	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr6:142472800-142487000	Weak transcription	Fetal Thymus	thymus
35	chr6:142472800-142487200	Weak transcription	Dnd41	blood
36	chr6:142472800-142487600	Weak transcription	Primary B cells from peripheral blood	blood
37	chr6:142473200-142487800	Weak transcription	Lung	lung
38	chr6:142474200-142487600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:142474600-142487000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:142474600-142500800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr6:142474800-142506800	Weak transcription	Hela-S3	cervix
42	chr6:142475200-142483400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:142475200-142487800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:142475800-142483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:142477000-142478600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr6:142477000-142487800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:142477200-142478800	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr6:142477200-142483400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:142477200-142486800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:142477200-142500600	Weak transcription	Fetal Brain Male	brain

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