Variant report

Variant	rs73590005
Chromosome Location	chr6:142586966-142586967
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:142586629-142587121	HepG2	liver:	n/a	n/a
2	TBP	chr6:142586677-142586992	HepG2	liver:	n/a	n/a
3	HDAC2	chr6:142586567-142587107	HepG2	liver:	n/a	chr6:142587047-142587061 chr6:142587043-142587057
4	TCF7L2	chr6:142586508-142587272	HepG2	liver:	n/a	chr6:142586782-142586792
5	HNF4A	chr6:142586508-142587037	HepG2	liver:	n/a	chr6:142586782-142586797 chr6:142586781-142586796 chr6:142586782-142586797 chr6:142586782-142586797 chr6:142586782-142586797
6	RXRA	chr6:142586613-142587019	HepG2	liver:	n/a	n/a
7	FOXA2	chr6:142585784-142587417	HepG2	liver:	n/a	n/a
8	JUND	chr6:142586649-142587037	HepG2	liver:	n/a	n/a
9	MAFK	chr6:142586674-142586990	HepG2	liver:	n/a	n/a
10	HNF4A	chr6:142586538-142587041	HepG2	liver:	n/a	chr6:142586782-142586797 chr6:142586781-142586796 chr6:142586782-142586797 chr6:142586782-142586797 chr6:142586782-142586797
11	SMC3	chr6:142586679-142587033	HepG2	liver:	n/a	n/a
12	MBD4	chr6:142586498-142587132	HepG2	liver:	n/a	n/a
13	HDAC2	chr6:142586567-142587117	HepG2	liver:	n/a	chr6:142587047-142587061 chr6:142587043-142587057
14	FOXA1	chr6:142586460-142587193	HepG2	liver:	n/a	n/a
15	EP300	chr6:142586504-142587040	HepG2	liver:	n/a	chr6:142586940-142586954
16	TEAD4	chr6:142586331-142587268	HepG2	liver:	n/a	n/a
17	FOXA2	chr6:142586553-142587066	HepG2	liver:	n/a	n/a
18	EP300	chr6:142586514-142587188	HepG2	liver:	n/a	chr6:142587046-142587060 chr6:142586940-142586954
19	RAD21	chr6:142586662-142587018	HepG2	liver:	n/a	n/a
20	MYBL2	chr6:142586542-142587069	HepG2	liver:	n/a	n/a
21	FOXA1	chr6:142586577-142587132	HepG2	liver:	n/a	n/a
22	HNF4G	chr6:142586523-142587016	HepG2	liver:	n/a	chr6:142586782-142586797 chr6:142586780-142586795 chr6:142586782-142586797 chr6:142586782-142586797 chr6:142586782-142586797
23	SP1	chr6:142586555-142587154	HepG2	liver:	n/a	n/a
24	NFIC	chr6:142586595-142587066	HepG2	liver:	n/a	n/a
25	HNF4G	chr6:142586550-142587059	HepG2	liver:	n/a	chr6:142586782-142586797 chr6:142586780-142586795 chr6:142586782-142586797 chr6:142586782-142586797 chr6:142586782-142586797
26	MYBL2	chr6:142586356-142587462	HepG2	liver:	n/a	n/a
27	TCF12	chr6:142586703-142586986	HepG2	liver:	n/a	n/a
28	FOXA1	chr6:142586495-142587134	HepG2	liver:	n/a	n/a
29	RCOR1	chr6:142586621-142587051	HepG2	liver:	n/a	n/a
30	EP300	chr6:142586710-142586999	HepG2	liver:	n/a	chr6:142586940-142586954
31	ARID3A	chr6:142586129-142587104	HepG2	liver:	n/a	n/a
32	HNF4A	chr6:142586634-142587058	HepG2	liver:	n/a	chr6:142586782-142586797 chr6:142586781-142586796 chr6:142586782-142586797 chr6:142586782-142586797 chr6:142586782-142586797
33	HEY1	chr6:142586694-142587061	HepG2	liver:	n/a	n/a
34	NFIC	chr6:142586179-142587152	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000266843	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2232294	1.00[AMR][1000 genomes]
rs2232299	1.00[AMR][1000 genomes]
rs58545531	1.00[AMR][1000 genomes]
rs73572396	1.00[AMR][1000 genomes]
rs73572398	1.00[AMR][1000 genomes]
rs73573688	1.00[AMR][1000 genomes]
rs73574224	1.00[AMR][1000 genomes]
rs73574240	1.00[AMR][1000 genomes]
rs73576259	1.00[AMR][1000 genomes]
rs73578320	1.00[AMR][1000 genomes]
rs73578323	1.00[AMR][1000 genomes]
rs73579801	1.00[AMR][1000 genomes]
rs73580458	1.00[AMR][1000 genomes]
rs73581604	1.00[AMR][1000 genomes]
rs73581617	1.00[AMR][1000 genomes]
rs73581623	1.00[AMR][1000 genomes]
rs73588179	1.00[AMR][1000 genomes]
rs73590065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73590081	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484604	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5511	chr6:142550032-142594960	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142583200-142590200	Weak transcription	Aorta	Aorta
2	chr6:142586400-142587600	Flanking Active TSS	HepG2	liver
3	chr6:142586600-142587000	Enhancers	Liver	Liver
4	chr6:142586600-142587600	Enhancers	Fetal Intestine Large	intestine
5	chr6:142586800-142587600	Enhancers	Fetal Intestine Small	intestine

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