Variant report
| Variant | rs73590081 |
|---|---|
| Chromosome Location | chr6:142590945-142590946 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:142587554..142589196-chr6:142590216..142591755,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs2232294 | 1.00[AMR][1000 genomes] |
| rs2232299 | 1.00[AMR][1000 genomes] |
| rs58545531 | 1.00[AMR][1000 genomes] |
| rs73572396 | 1.00[AMR][1000 genomes] |
| rs73572398 | 1.00[AMR][1000 genomes] |
| rs73573688 | 1.00[AMR][1000 genomes] |
| rs73574224 | 1.00[AMR][1000 genomes] |
| rs73574240 | 1.00[AMR][1000 genomes] |
| rs73576259 | 1.00[AMR][1000 genomes] |
| rs73578320 | 1.00[AMR][1000 genomes] |
| rs73578323 | 1.00[AMR][1000 genomes] |
| rs73579801 | 1.00[AMR][1000 genomes] |
| rs73580458 | 1.00[AMR][1000 genomes] |
| rs73581604 | 1.00[AMR][1000 genomes] |
| rs73581617 | 1.00[AMR][1000 genomes] |
| rs73581623 | 1.00[AMR][1000 genomes] |
| rs73588179 | 1.00[AMR][1000 genomes] |
| rs73590005 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73590065 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9484604 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv5511 | chr6:142550032-142594960 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv830825 | chr6:142585242-142752575 | Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:142590600-142597000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
