Variant report

Variant	rs59407077
Chromosome Location	chr4:16506073-16506074
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55953912	1.00[AMR][1000 genomes]
rs73798771	1.00[AMR][1000 genomes]
rs73798772	1.00[AMR][1000 genomes]
rs73798777	1.00[AMR][1000 genomes]
rs73798784	1.00[AMR][1000 genomes]
rs73799211	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3334209	chr4:16505884-16506097	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16496600-16508600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:16498400-16513200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:16498400-16518200	Weak transcription	Brain Angular Gyrus	brain
4	chr4:16498600-16509000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:16498800-16508000	Weak transcription	NHLF	lung
6	chr4:16498800-16509000	Weak transcription	Osteobl	bone
7	chr4:16500600-16507200	Weak transcription	HUVEC	blood vessel
8	chr4:16501200-16509000	Weak transcription	Fetal Intestine Large	intestine
9	chr4:16501200-16509400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:16501400-16510800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:16501400-16511400	Weak transcription	Gastric	stomach
12	chr4:16501600-16508800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:16502200-16510800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:16502200-16512200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:16502400-16510800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr4:16502800-16511400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:16502800-16512200	Weak transcription	Pancreas	Pancrea
18	chr4:16503000-16508400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:16503000-16510600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:16503000-16510800	Weak transcription	Fetal Lung	lung
21	chr4:16503000-16511200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:16503000-16511400	Weak transcription	Right Ventricle	heart
23	chr4:16503000-16513000	Weak transcription	Primary T cells from cord blood	blood
24	chr4:16503200-16506800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:16503200-16509000	Weak transcription	Liver	Liver
26	chr4:16503200-16509200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:16503200-16509200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:16503200-16510600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:16503200-16510800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:16503200-16518400	Weak transcription	Brain Substantia Nigra	brain
31	chr4:16503400-16506600	Strong transcription	Adipose Nuclei	Adipose
32	chr4:16503400-16510200	Weak transcription	Fetal Kidney	kidney
33	chr4:16504000-16508800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr4:16504200-16508000	Strong transcription	Fetal Stomach	stomach
35	chr4:16504200-16509600	Strong transcription	Fetal Muscle Leg	muscle
36	chr4:16504600-16506200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr4:16504600-16507000	Enhancers	Brain Germinal Matrix	brain
38	chr4:16504600-16508200	Weak transcription	Ovary	ovary
39	chr4:16504600-16509000	Weak transcription	Left Ventricle	heart
40	chr4:16504600-16509600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr4:16504600-16511400	Weak transcription	Esophagus	oesophagus
42	chr4:16504600-16511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr4:16504800-16507400	Weak transcription	Spleen	Spleen
44	chr4:16505000-16506200	Weak transcription	Placenta	Placenta
45	chr4:16505400-16509400	Weak transcription	Colon Smooth Muscle	Colon
46	chr4:16505400-16513400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr4:16505400-16522200	Weak transcription	Lung	lung
48	chr4:16505600-16506800	Weak transcription	Fetal Brain Male	brain
49	chr4:16505600-16508800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:16505600-16509200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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