Variant report

Variant	rs73799211
Chromosome Location	chr4:16626816-16626817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55953912	1.00[AMR][1000 genomes]
rs59407077	1.00[AMR][1000 genomes]
rs73798771	1.00[AMR][1000 genomes]
rs73798772	1.00[AMR][1000 genomes]
rs73798777	1.00[AMR][1000 genomes]
rs73798784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16617000-16643200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:16617600-16628000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:16617600-16630400	Weak transcription	Left Ventricle	heart
4	chr4:16620000-16628000	Weak transcription	Osteobl	bone
5	chr4:16620000-16628400	Weak transcription	Ovary	ovary
6	chr4:16621000-16629200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:16621000-16630400	Weak transcription	Right Atrium	heart
8	chr4:16622600-16631200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:16623400-16630000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:16624200-16628400	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:16624200-16628600	Weak transcription	Fetal Stomach	stomach
12	chr4:16625200-16628400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:16625200-16630400	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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