Variant report

Variant	rs59438692
Chromosome Location	chr2:100801609-100801610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11885939	1.00[AMR][1000 genomes]
rs11903467	1.00[AMR][1000 genomes]
rs55977934	1.00[AMR][1000 genomes]
rs56014037	1.00[AMR][1000 genomes]
rs57214256	1.00[AMR][1000 genomes]
rs58873938	1.00[AMR][1000 genomes]
rs59956756	1.00[AMR][1000 genomes]
rs6711900	1.00[AMR][1000 genomes]
rs72970605	1.00[AMR][1000 genomes]
rs72970614	1.00[AMR][1000 genomes]
rs7564817	1.00[AMR][1000 genomes]
rs7571711	1.00[AMR][1000 genomes]
rs7583493	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100791000-100809000	Weak transcription	Right Atrium	heart
2	chr2:100798400-100801800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:100799000-100802800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:100799800-100809000	Weak transcription	Right Ventricle	heart
5	chr2:100800000-100810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:100800000-100814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:100800800-100801800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:100800800-100801800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:100800800-100801800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr2:100801400-100802000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:100801400-100805800	Weak transcription	Adipose Nuclei	Adipose
12	chr2:100801600-100801800	Enhancers	Placenta	Placenta
13	chr2:100801600-100803800	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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