Variant report

Variant	rs7564817
Chromosome Location	chr2:100816431-100816432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11885939	1.00[AMR][1000 genomes]
rs11903467	1.00[AMR][1000 genomes]
rs55977934	1.00[AMR][1000 genomes]
rs56014037	1.00[AMR][1000 genomes]
rs57214256	1.00[AMR][1000 genomes]
rs58873938	1.00[AMR][1000 genomes]
rs59438692	1.00[AMR][1000 genomes]
rs59956756	1.00[AMR][1000 genomes]
rs6711900	1.00[AMR][1000 genomes]
rs72970605	1.00[AMR][1000 genomes]
rs72970614	1.00[AMR][1000 genomes]
rs7571711	1.00[AMR][1000 genomes]
rs7583493	1.00[AMR][1000 genomes]
rs7608701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100811800-100816600	Enhancers	Lung	lung
2	chr2:100813400-100817000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:100814600-100818600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:100814800-100820200	Weak transcription	Fetal Brain Male	brain
5	chr2:100815000-100823600	Weak transcription	Fetal Heart	heart
6	chr2:100815200-100817800	Weak transcription	HMEC	breast
7	chr2:100815200-100820400	Weak transcription	Fetal Brain Female	brain
8	chr2:100815600-100817000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:100815600-100817800	Weak transcription	NHDF-Ad	bronchial
10	chr2:100815600-100823800	Weak transcription	Left Ventricle	heart
11	chr2:100815800-100817600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:100816200-100816600	Weak transcription	HUVEC	blood vessel
13	chr2:100816200-100817800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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