Variant report

Variant	rs7583493
Chromosome Location	chr2:100651108-100651109
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58873938	1.00[AMR][1000 genomes]
rs59438692	1.00[AMR][1000 genomes]
rs6711900	1.00[AMR][1000 genomes]
rs72970605	1.00[AMR][1000 genomes]
rs72970614	1.00[AMR][1000 genomes]
rs7564817	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100624800-100657800	Weak transcription	Brain Germinal Matrix	brain
2	chr2:100633600-100652400	Weak transcription	Ovary	ovary
3	chr2:100633600-100653000	Weak transcription	Fetal Lung	lung
4	chr2:100633600-100660600	Weak transcription	Lung	lung
5	chr2:100637200-100658400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:100639000-100660600	Weak transcription	Primary T cells from cord blood	blood
7	chr2:100639600-100657000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:100644600-100668400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:100646400-100662600	Weak transcription	Gastric	stomach
10	chr2:100648200-100666800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:100648400-100651200	Weak transcription	Primary B cells from cord blood	blood
12	chr2:100648400-100651400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr2:100650600-100651800	Weak transcription	Fetal Brain Male	brain
14	chr2:100650600-100656800	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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