Variant report

Variant	rs59439273
Chromosome Location	chr8:130833050-130833051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16904154	1.00[AMR][1000 genomes]
rs16904155	1.00[AMR][1000 genomes]
rs55732450	0.83[AMR][1000 genomes]
rs60814482	1.00[AMR][1000 genomes]
rs60828490	1.00[AMR][1000 genomes]
rs73406847	1.00[AMR][1000 genomes]
rs73406852	1.00[AMR][1000 genomes]
rs73406872	1.00[AMR][1000 genomes]
rs73406873	1.00[AMR][1000 genomes]
rs73406877	1.00[AMR][1000 genomes]
rs73710909	1.00[AMR][1000 genomes]
rs73710936	1.00[AMR][1000 genomes]
rs73710937	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710953	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522535	chr8:130804293-130844400	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv526686	chr8:130808973-130839132	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130830800-130834000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:130830800-130838400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:130832000-130834200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:130832200-130834200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:130832400-130833400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:130832400-130833600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:130832400-130834000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:130832400-130834000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:130832400-130834000	Weak transcription	GM12878-XiMat	blood
10	chr8:130832400-130838400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:130832400-130838800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:130832600-130833400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr8:130832600-130837600	Weak transcription	HepG2	liver
14	chr8:130832600-130838400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:130832800-130838400	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links