Variant report

Variant	rs73406873
Chromosome Location	chr8:130831843-130831844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16904154	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55732450	0.83[AMR][1000 genomes]
rs59439273	1.00[AMR][1000 genomes]
rs60814482	1.00[AMR][1000 genomes]
rs60828490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406847	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406852	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406877	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710937	1.00[AMR][1000 genomes]
rs73710938	1.00[AMR][1000 genomes]
rs73710953	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522535	chr8:130804293-130844400	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv526686	chr8:130808973-130839132	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130827800-130832000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:130829400-130832600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130830600-130832200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:130830800-130832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:130830800-130832000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:130830800-130834000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr8:130830800-130838400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:130831000-130832000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:130831000-130832000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:130831000-130832000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:130831000-130832200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:130831600-130832400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:130831800-130832000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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