Variant report

Variant	rs59453829
Chromosome Location	chr15:60379323-60379324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1648238	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1680213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57163245	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57186144	0.90[AMR][1000 genomes]
rs59822950	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60642672	0.90[AMR][1000 genomes]
rs61266711	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7164858	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73429240	0.90[AMR][1000 genomes]
rs8036608	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8037661	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60371200-60385600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:60371600-60393400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:60376200-60383400	Weak transcription	NH-A	brain
4	chr15:60378600-60380800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:60378800-60379400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr15:60378800-60380600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:60379000-60379400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:60379000-60379600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:60379200-60379600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:60379200-60380200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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