Variant report

Variant	rs60642672
Chromosome Location	chr15:60383734-60383735
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60383264..60385120-chr15:60392540..60395389,2	MCF-7	breast:
2	chr15:60381810..60384191-chr15:60391616..60394290,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1648238	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1680213	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57163245	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57186144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59453829	0.90[AMR][1000 genomes]
rs59822950	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60472785	1.00[EUR][1000 genomes]
rs61266711	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164858	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429220	1.00[EUR][1000 genomes]
rs73429228	1.00[EUR][1000 genomes]
rs73429232	1.00[EUR][1000 genomes]
rs73429236	1.00[EUR][1000 genomes]
rs73429240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018824	1.00[EUR][1000 genomes]
rs8029494	1.00[EUR][1000 genomes]
rs8030308	1.00[EUR][1000 genomes]
rs8030714	1.00[EUR][1000 genomes]
rs8036608	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037661	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60371200-60385600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:60371600-60393400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:60382200-60383800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr15:60382400-60384600	Enhancers	NHEK	skin
5	chr15:60382400-60384800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:60382400-60386600	Enhancers	Liver	Liver
7	chr15:60382600-60384000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:60382600-60384400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:60382600-60384400	Enhancers	HMEC	breast
10	chr15:60382600-60386400	Enhancers	Adipose Nuclei	Adipose
11	chr15:60382600-60386600	Enhancers	Fetal Intestine Small	intestine
12	chr15:60382800-60384000	Enhancers	A549	lung
13	chr15:60382800-60384400	Enhancers	Osteobl	bone
14	chr15:60382800-60384600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:60382800-60384600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:60383000-60383800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr15:60383000-60383800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:60383000-60383800	Enhancers	HepG2	liver
19	chr15:60383000-60384000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr15:60383000-60384200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:60383200-60384800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:60383200-60385600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:60383200-60386000	Weak transcription	Esophagus	oesophagus
24	chr15:60383200-60386000	Weak transcription	Placenta	Placenta
25	chr15:60383200-60386200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:60383400-60384000	Enhancers	NH-A	brain
27	chr15:60383400-60384600	Enhancers	Hela-S3	cervix
28	chr15:60383600-60383800	Enhancers	HSMM	muscle
29	chr15:60383600-60387400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:60383600-60387800	Weak transcription	NHDF-Ad	bronchial

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