Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60359205..60362096-chr15:60376499..60379344,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1648238	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57163245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57186144	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59453829	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59822950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60472785	1.00[EUR][1000 genomes]
rs60642672	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61266711	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164858	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429220	1.00[EUR][1000 genomes]
rs73429228	1.00[EUR][1000 genomes]
rs73429232	1.00[EUR][1000 genomes]
rs73429236	1.00[EUR][1000 genomes]
rs73429240	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018824	1.00[EUR][1000 genomes]
rs8029494	1.00[EUR][1000 genomes]
rs8030308	1.00[EUR][1000 genomes]
rs8030714	1.00[EUR][1000 genomes]
rs8036608	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037661	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60371200-60385600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:60371600-60393400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:60376200-60383400	Weak transcription	NH-A	brain

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