Variant report

Variant	rs8030308
Chromosome Location	chr15:60392877-60392878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1648238	1.00[EUR][1000 genomes]
rs1680213	1.00[EUR][1000 genomes]
rs57163245	1.00[EUR][1000 genomes]
rs57186144	1.00[EUR][1000 genomes]
rs59822950	1.00[EUR][1000 genomes]
rs60472785	1.00[EUR][1000 genomes]
rs60642672	1.00[EUR][1000 genomes]
rs61266711	1.00[EUR][1000 genomes]
rs7164858	1.00[EUR][1000 genomes]
rs73429220	1.00[EUR][1000 genomes]
rs73429228	1.00[EUR][1000 genomes]
rs73429232	1.00[EUR][1000 genomes]
rs73429236	1.00[EUR][1000 genomes]
rs73429240	1.00[EUR][1000 genomes]
rs74018824	1.00[EUR][1000 genomes]
rs8029494	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030714	1.00[EUR][1000 genomes]
rs8036608	1.00[EUR][1000 genomes]
rs8037661	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60371600-60393400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:60388600-60395000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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