Variant report

Variant	rs74018824
Chromosome Location	chr15:60412950-60412951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:60412363-60412960	H1-hESC	embryonic stem cell:	n/a	chr15:60412539-60412555 chr15:60412546-60412561 chr15:60412548-60412555

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:60412939-60412989	MCF10A-Er-Src	breast:	n/a
2	chr15:60412939-60412989	SKMC	muscle:	n/a
3	chr15:60412939-60412989	IMR90	lung:	fetal
4	chr15:60412939-60412989	HCF	heart:	n/a
5	chr15:60412939-60412989	HRCEpiC	kidney:	n/a
6	chr15:60412939-60412989	HAEpiC	amniotic membrane:	n/a
7	chr15:60412939-60412989	RPTEC	kidney:	n/a
8	chr15:60412939-60412989	SK-N-MC	brain:	n/a
9	chr15:60412939-60412989	AG09319	gingival:	n/a
10	chr15:60412939-60412989	ProgFib	skin:	n/a
11	chr15:60412939-60412989	HPAEpiC	pulmonary alveolar:	n/a
12	chr15:60412939-60412989	PrEC	prostate:	n/a
13	chr15:60412939-60412989	Hela-S3	cervix:	n/a
14	chr15:60412939-60412989	HEEpiC	esophagus:	n/a
15	chr15:60412939-60412989	CMK	blood:	n/a
16	chr15:60412939-60412989	SAEC	small airway:	n/a
17	chr15:60412939-60412989	LNCaP	prostate:	n/a
18	chr15:60412939-60412989	NHDF-neo	bronchial:	n/a
19	chr15:60412939-60412989	HMEC	breast:	n/a
20	chr15:60412939-60412989	AoSMC	blood vessel:	n/a
21	chr15:60412939-60412989	HNPCEpiC	eye:	n/a
22	chr15:60412939-60412989	HIPEpiC	eye:	n/a
23	chr15:60412939-60412989	GM19239	blood:	n/a
24	chr15:60412939-60412989	PANC-1	pancreas:	n/a
25	chr15:60412939-60412989	HCM	heart:	n/a
26	chr15:60412939-60412989	NHBE	bronchial:	n/a
27	chr15:60412939-60412989	GM06990	blood:	n/a
28	chr15:60412939-60412989	AG04450	lung:	fetal
29	chr15:60412939-60412989	HL-60	blood:	n/a
30	chr15:60412939-60412989	HEK293	kidney:	embryo
31	chr15:60412939-60412989	HRPEpiC	eye:	n/a
32	chr15:60412939-60412989	HCT-116	colon:	n/a
33	chr15:60412939-60412989	HRE	kidney:	n/a
34	chr15:60412939-60412989	PFSK-1	brain:	n/a
35	chr15:60412939-60412989	AG09309	skin:	n/a
36	chr15:60412939-60412989	GM12891	blood:	n/a
37	chr15:60412939-60412989	SK-N-SH_RA	brain:	n/a
38	chr15:60412939-60412989	Jurkat	blood:	n/a
39	chr15:60412939-60412989	ECC-1	luminal epithelium:	n/a
40	chr15:60412939-60412989	HCPEpiC	choroid plexus:	n/a
41	chr15:60412939-60412989	T-47D	breast:	n/a
42	chr15:60412939-60412989	NH-A	brain:	n/a
43	chr15:60412939-60412989	HepG2	liver:	n/a
44	chr15:60412939-60412989	BJ	skin:	n/a
45	chr15:60412939-60412989	NT2-D1	testis:	n/a
46	chr15:60412939-60412989	H1-hESC	embryonic stem cell:	embryo
47	chr15:60412939-60412989	GM12878	blood:	n/a
48	chr15:60412939-60412989	NB4	blood:	n/a
49	chr15:60412939-60412989	A549	lung:	n/a
50	chr15:60412939-60412989	U87	brain:	n/a

No data

Variant related genes	Relation type
ENSG00000259223	TF binding region
ENSG00000259223	CpG island

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1648238	1.00[EUR][1000 genomes]
rs1680213	1.00[EUR][1000 genomes]
rs57163245	1.00[EUR][1000 genomes]
rs57186144	1.00[EUR][1000 genomes]
rs59822950	1.00[EUR][1000 genomes]
rs60472785	1.00[EUR][1000 genomes]
rs60642672	1.00[EUR][1000 genomes]
rs61266711	1.00[EUR][1000 genomes]
rs7164858	1.00[EUR][1000 genomes]
rs73429220	1.00[EUR][1000 genomes]
rs73429228	1.00[EUR][1000 genomes]
rs73429232	1.00[EUR][1000 genomes]
rs73429236	1.00[EUR][1000 genomes]
rs73429240	1.00[EUR][1000 genomes]
rs8029494	1.00[EUR][1000 genomes]
rs8030308	1.00[EUR][1000 genomes]
rs8030714	1.00[EUR][1000 genomes]
rs8036608	1.00[EUR][1000 genomes]
rs8037661	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60407600-60413000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:60410600-60414400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:60410800-60413200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:60411000-60413000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr15:60411200-60413000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr15:60411200-60413600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr15:60411400-60413400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:60411400-60413400	Enhancers	Brain Substantia Nigra	brain
9	chr15:60411600-60413200	Enhancers	Dnd41	blood
10	chr15:60411800-60413000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr15:60411800-60413200	Enhancers	Brain Hippocampus Middle	brain
12	chr15:60412200-60413000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:60412200-60413200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr15:60412200-60413200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:60412200-60415200	Enhancers	GM12878-XiMat	blood
16	chr15:60412400-60413000	Enhancers	Thymus	Thymus
17	chr15:60412600-60413000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr15:60412600-60413000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:60412600-60414600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
20	chr15:60412600-60416800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:60412600-60419400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:60412600-60419400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:60412800-60413000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr15:60412800-60413200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr15:60412800-60413400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:60412800-60413600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
27	chr15:60412800-60413800	Enhancers	HUES6 Cell Line	embryonic stem cell

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