Variant report

Variant	rs59473547
Chromosome Location	chr3:134039476-134039477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11925583	1.00[EUR][1000 genomes]
rs2173448	1.00[EUR][1000 genomes]
rs2400272	1.00[EUR][1000 genomes]
rs35161002	1.00[EUR][1000 genomes]
rs56874024	1.00[EUR][1000 genomes]
rs60048996	1.00[EUR][1000 genomes]
rs6798709	1.00[EUR][1000 genomes]
rs7433301	1.00[EUR][1000 genomes]
rs7623024	1.00[EUR][1000 genomes]
rs7629849	1.00[EUR][1000 genomes]
rs7643419	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134034600-134046200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:134034800-134041600	Weak transcription	Pancreas	Pancrea
3	chr3:134034800-134043200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:134034800-134044200	Weak transcription	Right Ventricle	heart
5	chr3:134035000-134041200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:134035000-134044000	Weak transcription	Fetal Heart	heart
7	chr3:134035000-134044200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:134035000-134045000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:134035000-134058800	Weak transcription	Liver	Liver
10	chr3:134036600-134043200	Weak transcription	Lung	lung
11	chr3:134036600-134044200	Weak transcription	Esophagus	oesophagus
12	chr3:134036600-134045000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:134036600-134050600	Weak transcription	Fetal Brain Female	brain
14	chr3:134037000-134042600	Weak transcription	Adipose Nuclei	Adipose
15	chr3:134037200-134039600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:134037200-134042800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:134037200-134043200	Weak transcription	NHDF-Ad	bronchial
18	chr3:134037200-134043400	Weak transcription	HSMMtube	muscle
19	chr3:134037600-134040800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:134038800-134040000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:134038800-134040000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:134038800-134040000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:134038800-134040200	Enhancers	HSMM	muscle
24	chr3:134039200-134039800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:134039200-134040000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr3:134039200-134040200	Enhancers	HMEC	breast
27	chr3:134039400-134039800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr3:134039400-134039800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr3:134039400-134039800	Enhancers	A549	lung
30	chr3:134039400-134039800	Enhancers	Hela-S3	cervix
31	chr3:134039400-134039800	Flanking Active TSS	NHEK	skin
32	chr3:134039400-134040000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:134039400-134040000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:134039400-134040000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:134039400-134040000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:134039400-134040000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:134039400-134040000	Enhancers	Placenta	Placenta
38	chr3:134039400-134040000	Enhancers	Gastric	stomach
39	chr3:134039400-134040000	Enhancers	Stomach Mucosa	stomach
40	chr3:134039400-134040000	Enhancers	NH-A	brain
41	chr3:134039400-134040000	Enhancers	NHLF	lung
42	chr3:134039400-134040000	Enhancers	Osteobl	bone
43	chr3:134039400-134041800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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