Variant report

Variant	rs6798709
Chromosome Location	chr3:134100055-134100056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134097967..134100693-chr3:134192523..134195413,2	MCF-7	breast:
2	chr3:134091805..134100491-chr3:134198620..134206897,15	MCF-7	breast:
3	chr3:134024307..134037207-chr3:134080573..134100993,88	MCF-7	breast:
4	chr3:134098337..134101094-chr3:134196289..134198473,2	MCF-7	breast:
5	chr3:134099072..134100750-chr3:134112662..134114251,2	MCF-7	breast:
6	chr3:134099796..134102271-chr3:134165390..134167707,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182923	Chromatin interaction
ENSG00000129055	Chromatin interaction
ENSG00000240006	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11925583	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2173448	1.00[EUR][1000 genomes]
rs2400272	1.00[EUR][1000 genomes]
rs35161002	1.00[EUR][1000 genomes]
rs56874024	1.00[EUR][1000 genomes]
rs59473547	1.00[EUR][1000 genomes]
rs60048996	1.00[EUR][1000 genomes]
rs7433301	1.00[EUR][1000 genomes]
rs7623024	1.00[EUR][1000 genomes]
rs7629849	1.00[EUR][1000 genomes]
rs7643419	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134094400-134101400	Weak transcription	Aorta	Aorta
2	chr3:134094600-134100200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:134094800-134101200	Weak transcription	Gastric	stomach
4	chr3:134095600-134100200	Weak transcription	Small Intestine	intestine
5	chr3:134095600-134100400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:134096000-134100200	Weak transcription	Pancreas	Pancrea
7	chr3:134096000-134100200	Weak transcription	Stomach Mucosa	stomach
8	chr3:134096000-134100400	Weak transcription	Colonic Mucosa	Colon
9	chr3:134096000-134102800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:134096200-134100200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:134096200-134100200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:134097200-134100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:134097400-134100200	Weak transcription	Adipose Nuclei	Adipose
14	chr3:134097400-134100200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:134097400-134100200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:134097400-134100400	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:134097400-134100400	Weak transcription	Placenta	Placenta
18	chr3:134097400-134104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:134097800-134100400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:134098000-134100200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:134098000-134100200	Weak transcription	Esophagus	oesophagus
22	chr3:134098000-134100400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:134098000-134100800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:134098000-134101800	Weak transcription	Right Ventricle	heart
25	chr3:134098000-134107200	Weak transcription	Lung	lung
26	chr3:134098000-134111200	Weak transcription	Right Atrium	heart
27	chr3:134098200-134100200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:134099200-134100200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:134099800-134100600	Enhancers	NHLF	lung
30	chr3:134100000-134100200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:134100000-134100400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:134100000-134100400	Enhancers	HMEC	breast
33	chr3:134100000-134100600	Enhancers	NHDF-Ad	bronchial
34	chr3:134100000-134100800	Flanking Active TSS	NHEK	skin
35	chr3:134100000-134101200	Enhancers	Fetal Muscle Leg	muscle
36	chr3:134100000-134101400	Enhancers	Duodenum Mucosa	Duodenum
37	chr3:134100000-134102000	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr3:134100000-134102000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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