Variant report

Variant	rs7433301
Chromosome Location	chr3:134047028-134047029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:134044455..134047309-chr3:134153979..134155678,2	MCF-7	breast:
2	chr3:134046187..134047077-chr3:134069663..134070556,4	MCF-7	breast:
3	chr3:134046045..134047071-chr3:134069689..134070482,4	MCF-7	breast:
4	chr3:134046165..134047037-chr3:134079239..134080512,3	MCF-7	breast:
5	chr17:57924403..57926860-chr3:134044708..134047520,2	MCF-7	breast:
6	chr3:134046212..134047099-chr3:134070539..134071809,3	MCF-7	breast:
7	chr3:134025978..134037323-chr3:134040972..134053086,34	MCF-7	breast:
8	chr3:134046282..134047057-chr3:134070883..134071666,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000201524	Chromatin interaction
ENSG00000214289	Chromatin interaction
ENSG00000240006	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11925583	1.00[EUR][1000 genomes]
rs2173448	1.00[EUR][1000 genomes]
rs2400272	1.00[EUR][1000 genomes]
rs35161002	1.00[EUR][1000 genomes]
rs56874024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59473547	1.00[EUR][1000 genomes]
rs60048996	1.00[EUR][1000 genomes]
rs6798709	1.00[EUR][1000 genomes]
rs7623024	1.00[EUR][1000 genomes]
rs7629849	1.00[EUR][1000 genomes]
rs7643419	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134035000-134058800	Weak transcription	Liver	Liver
2	chr3:134036600-134050600	Weak transcription	Fetal Brain Female	brain
3	chr3:134041200-134056600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:134041600-134047400	Enhancers	Pancreas	Pancrea
5	chr3:134042000-134060800	Enhancers	Placenta	Placenta
6	chr3:134042200-134050600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr3:134042200-134052400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:134042600-134054000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:134042600-134054400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:134042800-134057000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:134043200-134047600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:134044000-134047200	Enhancers	Fetal Heart	heart
13	chr3:134044000-134054400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:134044200-134047400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr3:134044200-134047400	Enhancers	Fetal Muscle Leg	muscle
16	chr3:134044200-134047400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr3:134044200-134047600	Enhancers	Esophagus	oesophagus
18	chr3:134044200-134047800	Enhancers	HepG2	liver
19	chr3:134044400-134047400	Enhancers	Colon Smooth Muscle	Colon
20	chr3:134044600-134047400	Enhancers	Fetal Muscle Trunk	muscle
21	chr3:134044600-134047600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:134044600-134047600	Enhancers	HUVEC	blood vessel
23	chr3:134044800-134047600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr3:134044800-134048000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:134045000-134047200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr3:134045000-134047400	Flanking Active TSS	NH-A	brain
27	chr3:134045000-134047600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:134045000-134047800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr3:134045000-134048000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:134045000-134056400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:134045200-134049200	Weak transcription	Fetal Intestine Small	intestine
32	chr3:134045400-134047400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:134045400-134047800	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr3:134045400-134050200	Weak transcription	Gastric	stomach
35	chr3:134045400-134052600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr3:134045600-134047200	Flanking Active TSS	NHEK	skin
37	chr3:134046000-134052400	Weak transcription	Brain Hippocampus Middle	brain
38	chr3:134046400-134047200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr3:134046400-134047600	Enhancers	Stomach Smooth Muscle	stomach
40	chr3:134046400-134049400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:134046400-134049600	Weak transcription	Fetal Stomach	stomach
42	chr3:134046400-134051800	Enhancers	Adipose Nuclei	Adipose
43	chr3:134046400-134052600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr3:134046600-134047200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:134046600-134047200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:134046600-134047200	Enhancers	Osteobl	bone
47	chr3:134046600-134047400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:134046600-134047800	Enhancers	NHLF	lung
49	chr3:134046600-134048200	Enhancers	HSMM	muscle
50	chr3:134046600-134048400	Weak transcription	Aorta	Aorta

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