The 2.0 version of rSNPBase

Variant report

Variant rs59502807
Chromosome Location chr1:214537188-214537189
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214503200-214537800 Weak transcription Gastric stomach
2 chr1:214513600-214552200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr1:214514000-214537800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr1:214515400-214542600 Weak transcription Brain Substantia Nigra brain
5 chr1:214518400-214537800 Weak transcription Fetal Brain Male brain
6 chr1:214519000-214557800 Weak transcription Dnd41 blood
7 chr1:214519200-214577200 Weak transcription Primary hematopoietic stem cells blood
8 chr1:214521200-214537600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:214522800-214552800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr1:214523400-214540800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr1:214524400-214574400 Weak transcription Brain Hippocampus Middle brain
12 chr1:214524800-214537800 Strong transcription NHEK skin
13 chr1:214524800-214539200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:214525600-214540000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr1:214526000-214538600 Strong transcription Stomach Smooth Muscle stomach
16 chr1:214526000-214544600 Weak transcription Spleen Spleen
17 chr1:214526400-214537200 Strong transcription Fetal Muscle Trunk muscle
18 chr1:214526400-214542400 Strong transcription Fetal Adrenal Gland Adrenal Gland
19 chr1:214527400-214540600 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr1:214527800-214542400 Weak transcription HepG2 liver
21 chr1:214528600-214539800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:214528600-214552800 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr1:214528600-214555800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:214528800-214537200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr1:214528800-214538800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:214528800-214539200 Strong transcription HUES6 Cell Line embryonic stem cell
27 chr1:214528800-214551800 Strong transcription HUES64 Cell Line embryonic stem cell
28 chr1:214529000-214538400 Strong transcription HUES48 Cell Line embryonic stem cell
29 chr1:214529000-214584200 Weak transcription Brain Anterior Caudate brain
30 chr1:214529200-214539600 Strong transcription Fetal Stomach stomach
31 chr1:214529400-214561800 Weak transcription Brain Angular Gyrus brain
32 chr1:214529600-214537800 Strong transcription Placenta Amnion Placenta Amnion
33 chr1:214529600-214544600 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr1:214531600-214543400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:214531600-214556800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
36 chr1:214532000-214537200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
37 chr1:214533000-214539200 Strong transcription Fetal Lung lung
38 chr1:214533200-214538400 Strong transcription NHLF lung
39 chr1:214533200-214538600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr1:214533400-214538800 Strong transcription H1 Cell Line embryonic stem cell
41 chr1:214533600-214538600 Strong transcription ES-I3 Cell Line embryonic stem cell
42 chr1:214534000-214538800 Strong transcription H9 Cell Line embryonic stem cell
43 chr1:214534000-214557000 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr1:214534200-214537200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr1:214534200-214537200 Weak transcription Duodenum Mucosa Duodenum
46 chr1:214534200-214537800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:214534400-214537600 Strong transcription Duodenum Smooth Muscle Duodenum
48 chr1:214534400-214538000 Enhancers Primary hematopoietic stem cells short term culture blood
49 chr1:214534800-214537200 Enhancers Primary monocytes fromperipheralblood blood
50 chr1:214534800-214538200 Genic enhancers HSMM muscle

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Last update: Aug 31, 2015