Variant report

Variant	rs73074017
Chromosome Location	chr1:214538779-214538780
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214530055..214531604-chr1:214538160..214540295,2	K562	blood:
2	chr1:214533625..214536259-chr1:214538057..214540162,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228470	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56738377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57604915	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59502807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60187136	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60331477	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61650888	1.00[ASN][1000 genomes]
rs73074007	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73074020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074025	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074041	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074045	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074052	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074055	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074084	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092357	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092358	1.00[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214513600-214552200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:214515400-214542600	Weak transcription	Brain Substantia Nigra	brain
3	chr1:214519000-214557800	Weak transcription	Dnd41	blood
4	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:214522800-214552800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:214523400-214540800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:214524400-214574400	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:214524800-214539200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:214525600-214540000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:214526000-214544600	Weak transcription	Spleen	Spleen
11	chr1:214526400-214542400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:214527400-214540600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:214527800-214542400	Weak transcription	HepG2	liver
14	chr1:214528600-214539800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:214528600-214552800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:214528600-214555800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:214528800-214538800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:214528800-214539200	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:214528800-214551800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:214529000-214584200	Weak transcription	Brain Anterior Caudate	brain
21	chr1:214529200-214539600	Strong transcription	Fetal Stomach	stomach
22	chr1:214529400-214561800	Weak transcription	Brain Angular Gyrus	brain
23	chr1:214529600-214544600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:214531600-214543400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:214531600-214556800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:214533000-214539200	Strong transcription	Fetal Lung	lung
27	chr1:214533400-214538800	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr1:214534000-214538800	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr1:214534000-214557000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:214534800-214538800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr1:214534800-214540400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:214535200-214542800	Weak transcription	A549	lung
33	chr1:214535400-214538800	Genic enhancers	Fetal Muscle Leg	muscle
34	chr1:214535600-214538800	Genic enhancers	NHDF-Ad	bronchial
35	chr1:214536000-214539000	Strong transcription	Placenta	Placenta
36	chr1:214536000-214545400	Strong transcription	NH-A	brain
37	chr1:214536200-214551000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:214536400-214538800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:214536400-214539000	Strong transcription	HMEC	breast
40	chr1:214537000-214538800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:214537000-214538800	Enhancers	Right Atrium	heart
42	chr1:214537200-214538800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:214537200-214538800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr1:214537200-214538800	Genic enhancers	Fetal Muscle Trunk	muscle
45	chr1:214537600-214538800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr1:214537600-214540800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr1:214537600-214545000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr1:214537600-214577000	Weak transcription	Stomach Mucosa	stomach
49	chr1:214537800-214538800	Enhancers	Brain Germinal Matrix	brain
50	chr1:214537800-214538800	Genic enhancers	NHEK	skin

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